mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 303 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638146 | 117 (0.910) | 6 (0.050) | 6/156 | NT | 5.2% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 116 (1.040) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||
| * | ? | NC_000913 | = 4534139 | 143 (1.120) | 8 (0.070) | 7/158 | NT | 6.0% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 123 (1.080) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4517045 = | 148 (1.160) | 5 (0.040) | 4/168 | NT | 3.3% | coding (673/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | 4517072 = | 152 (1.260) | coding (646/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | NC_000913 | = 4512524 | 153 (1.200) | 6 (0.050) | 4/164 | NT | 4.0% | coding (886/999 nt) | fecC | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4512556 | 150 (1.270) | coding (854/999 nt) | fecC | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | 4475322 = | 127 (0.990) | 6 (0.050) | 5/158 | NT | 5.4% | intergenic (+8/‑115) | tabA/yjgL | biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein/SopA‑central‑domain‑like hexapeptide repeat protein |
| ? | NC_000913 | 4475352 = | 96 (0.850) | intergenic (+38/‑85) | tabA/yjgL | biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein/SopA‑central‑domain‑like hexapeptide repeat protein | |||||
| * | ? | NC_000913 | 4467477 = | 149 (1.160) | 6 (0.050) | 5/162 | NT | 4.2% | coding (47/54 nt) | mgtL | regulatory leader peptide for mgtA |
| ? | NC_000913 | 4467511 = | 138 (1.190) | intergenic (+27/‑114) | mgtL/mgtA | regulatory leader peptide for mgtA/magnesium transporter | |||||
| * | ? | NC_000913 | 4467063 = | 128 (1.000) | 7 (0.060) | 5/170 | NT | 5.3% | coding (184/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| ? | NC_000913 | 4467094 = | 126 (1.030) | coding (153/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
| * | ? | NC_000913 | = 4463021 | 169 (1.320) | 4 (0.030) | 4/166 | NT | 2.4% | intergenic (‑361/+33) | nrdD/treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑P hydrolase |
| ? | NC_000913 | = 4463035 | 171 (1.430) | intergenic (‑375/+19) | nrdD/treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑P hydrolase | |||||
| * | ? | NC_000913 | = 4449524 | 132 (1.030) | 6 (0.050) | 4/168 | NT | 4.6% | coding (129/531 nt) | ppa | inorganic pyrophosphatase |
| ? | NC_000913 | = 4449539 | 127 (1.050) | coding (114/531 nt) | ppa | inorganic pyrophosphatase | |||||
| * | ? | NC_000913 | 4433109 = | 146 (1.140) | 9 (0.080) | 8/166 | NT | 6.5% | intergenic (‑53/+55) | ytfF/qorB | DMT transporter family inner membrane protein/NAD(P)H:quinone oxidoreductase |
| ? | NC_000913 | 4433147 = | 122 (1.020) | intergenic (‑91/+17) | ytfF/qorB | DMT transporter family inner membrane protein/NAD(P)H:quinone oxidoreductase | |||||