mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,763,556 | 0 | T | C | 63.4% | 101.0 / 105.1 | 101 | noncoding (288/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 2,359,867 | 0 | G | A | 40.9% | 66.0 / 105.3 | 88 | noncoding (1228/2905 nt) | rrlA | 23S ribosomal RNA |
| * | minE | 2,359,876 | 0 | C | T | 31.0% | 172.9 / 99.6 | 116 | noncoding (1219/2905 nt) | rrlA | 23S ribosomal RNA |
| * | minE | 2,254,204 | 0 | G | T | 23.3% | 151.6 / 29.1 | 61 | A945D (GCT→GAT) | rpoC | RNA polymerase, beta prime subunit |
| * | minE | 1,763,636 | 0 | A | G | 21.9% | 57.9 / 14.4 | 32 | noncoding (208/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 2,254,198 | 0 | T | C | 21.5% | 133.8 / 32.7 | 65 | E947G (GAA→GGA) | rpoC | RNA polymerase, beta prime subunit |
| * | minE | 471,243 | 0 | G | C | 20.0% | 108.5 / 19.5 | 45 | A203A (GCG→GCC) | sucD | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit |
| * | minE | 2,336,583 | 0 | T | A | 20.0% | 84.3 / 17.6 | 40 | C24S (TGC→AGC) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit |
| * | minE | 2,336,585 | 0 | C | A | 20.0% | 101.6 / 13.6 | 40 | C24* (TGC→TGA) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit |
| Marginal new junction evidence (lowest skew 10 of 255 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1820891 = | 66 (1.110) | 9 (0.170) | 7/106 | 2.2 | 13.5% | coding (198/1440 nt) | norV | flavorubredoxin oxidoreductase |
| ? | minE | 1820914 = | 57 (1.080) | coding (221/1440 nt) | norV | flavorubredoxin oxidoreductase | |||||
| * | ? | minE | 1390795 = | 91 (1.520) | 14 (0.270) | 6/106 | 2.5 | 16.3% | intergenic (+69/+356) | nfo/fruA | endonuclease IV with intrinsic 3'‑5' exonuclease activity/fused fructose‑specific PTS enzyme IIB'BC components |
| ? | minE | 1390821 = | 64 (1.220) | intergenic (+95/+330) | nfo/fruA | endonuclease IV with intrinsic 3'‑5' exonuclease activity/fused fructose‑specific PTS enzyme IIB'BC components | |||||
| * | ? | minE | 2616963 = | 134 (2.240) | 9 (0.170) | 5/108 | 2.8 | 7.6% | coding (272/558 nt) | dcrB | periplasmic protein |
| ? | minE | 2616985 = | 100 (1.860) | coding (250/558 nt) | dcrB | periplasmic protein | |||||
| * | ? | minE | 2598585 = | 66 (1.110) | 4 (0.080) | 4/104 | 3.0 | 5.4% | coding (649/1353 nt) | gor | glutathione oxidoreductase |
| ? | minE | 2598620 = | 83 (1.610) | coding (614/1353 nt) | gor | glutathione oxidoreductase | |||||
| * | ? | minE | = 2596527 | 84 (1.410) | 11 (0.210) | 4/106 | 3.0 | 13.8% | coding (71/1290 nt) | arsB | arsenite/antimonite transporter |
| ? | minE | = 2596539 | 63 (1.200) | coding (59/1290 nt) | arsB | arsenite/antimonite transporter | |||||
| * | ? | minE | 2546002 = | 33 (0.550) | 9 (0.150) | 5/120 | 3.0 | 21.7% | coding (545/1047 nt) | rfaF | ADP‑heptose:LPS heptosyltransferase II |
| ? | minE | 2546026 = | 32 (0.540) | coding (521/1047 nt) | rfaF | ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | minE | 1874384 = | 75 (1.260) | 4 (0.080) | 4/102 | 3.0 | 6.0% | coding (517/672 nt) | ygcF | conserved hypothetical protein |
| ? | minE | 1874424 = | 61 (1.210) | coding (477/672 nt) | ygcF | conserved hypothetical protein | |||||
| * | ? | minE | = 1073937 | 46 (0.770) | 5 (0.100) | 4/102 | 3.0 | 10.4% | intergenic (‑119/‑189) | ydhQ/valV | conserved hypothetical protein/tRNA‑Val |
| ? | minE | = 1073950 | 47 (0.930) | intergenic (‑132/‑176) | ydhQ/valV | conserved hypothetical protein/tRNA‑Val | |||||
| * | ? | minE | = 937423 | NA (NA) | 8 (0.150) | 4/106 | 3.0 | 12.2% | intergenic (+329/+78) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/predicted DNA‑binding transcriptional regulator |
| ? | minE | = 2911852 | 65 (1.090) | intergenic (+147/+59) | mgtA/yjgF | magnesium transporter/ketoacid‑binding protein | |||||
| * | ? | minE | = 937423 | NA (NA) | 8 (0.150) | 4/106 | 3.0 | 15.6% | intergenic (+329/+78) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/predicted DNA‑binding transcriptional regulator |
| ? | minE | = 2708585 | 49 (0.820) | intergenic (+123/‑167) | trpS/yhfZ | tryptophanyl‑tRNA synthetase/conserved hypothetical protein | |||||