mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 237 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4624051 = | 104 (1.150) | 4 (0.050) | 4/262 | NT | 4.0% | coding (67/1017 nt) | lplA | lipoate‑protein ligase A |
| ? | NC_000913 | 4624090 = | 94 (1.090) | coding (28/1017 nt) | lplA | lipoate‑protein ligase A | |||||
| * | ? | NC_000913 | 4614941 = | 85 (0.940) | 4 (0.050) | 3/264 | NT | 4.8% | coding (603/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | 4614971 = | 77 (0.890) | coding (573/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | 4594863 = | 106 (1.170) | 4 (0.050) | 4/262 | NT | 3.7% | intergenic (‑141/+74) | lgoT/lgoR | putative L‑galactonate:H+ symporter/putative transcriptional activator for L‑galactonate catabolism |
| ? | NC_000913 | 4594911 = | 107 (1.240) | intergenic (‑189/+26) | lgoT/lgoR | putative L‑galactonate:H+ symporter/putative transcriptional activator for L‑galactonate catabolism | |||||
| * | ? | NC_000913 | = 4579877 | 96 (1.060) | 5 (0.060) | 5/262 | NT | 4.9% | noncoding (43/77 nt) | symR | sRNA antisense regulator destabilizing divergent and overlapping symE mRNA |
| ? | NC_000913 | = 4579907 | 103 (1.190) | noncoding (73/77 nt) | symR | sRNA antisense regulator destabilizing divergent and overlapping symE mRNA | |||||
| * | ? | NC_000913 | 4574406 = | 109 (1.210) | 3 (0.030) | 3/262 | NT | 2.9% | pseudogene (488/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | 4574441 = | 95 (1.100) | pseudogene (523/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| * | ? | NC_000913 | = 4556802 | 151 (1.670) | 5 (0.060) | 5/258 | NT | 3.4% | intergenic (‑482/‑191) | yjiC/iraD | uncharacterized protein/RpoS stabilzer after DNA damage, anti‑RssB factor |
| ? | NC_000913 | = 4556808 | 144 (1.700) | intergenic (‑488/‑185) | yjiC/iraD | uncharacterized protein/RpoS stabilzer after DNA damage, anti‑RssB factor | |||||
| * | ? | NC_000913 | = 4534139 | 113 (1.250) | 4 (0.050) | 4/254 | NT | 3.5% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 113 (1.350) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4532853 = | 95 (1.050) | 4 (0.050) | 4/268 | NT | 4.2% | coding (331/747 nt) | yjhP | putative methyltransferase |
| ? | NC_000913 | 4532906 = | 91 (1.030) | coding (278/747 nt) | yjhP | putative methyltransferase | |||||
| * | ? | NC_000913 | = 4491362 | 84 (0.930) | 3 (0.030) | 3/264 | NT | 3.5% | coding (1164/1320 nt) | idnT | L‑idonate and D‑gluconate transporter |
| ? | NC_000913 | = 4491399 | 86 (0.990) | coding (1127/1320 nt) | idnT | L‑idonate and D‑gluconate transporter | |||||
| * | ? | NC_000913 | = 4488413 | 89 (0.990) | 3 (0.040) | 3/252 | NT | 3.3% | intergenic (+13/+148) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| ? | NC_000913 | = 4488457 | 92 (1.110) | intergenic (+57/+104) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold | |||||