mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 596,346 | 0 | C | T | 55.2% | 9.2 / 31.2 | 29 | Y249Y (TAC→TAT) | cusC | copper/silver export system outer membrane channel |
| * | NC_000913 | 2,003,273 | 0 | T | C | 54.5% | ‑1.1 / 25.9 | 22 | I112V (ATC→GTC) | fliC | flagellar filament structural protein |
| * | NC_000913 | 2,817,132 | 0 | T | C | 49.2% | 2.2 / 85.2 | 61 | G124G (GGA→GGG) | yqaB | fructose‑1‑phosphatase |
| * | NC_000913 | 3,447,651 | 0 | G | A | 47.8% | ‑4.6 / 29.6 | 23 | I39I (ATC→ATT) | rplX | 50S ribosomal subunit protein L24 |
| * | NC_000913 | 2,773,776 | 0 | C | T | 40.0% | 4.6 / 11.0 | 15 | H153H (CAC→CAT) | yfjW | CP4‑57 prophage; uncharacterized protein YfjW |
| * | NC_000913 | 3,006,320 | 0 | A | G | 39.3% | 19.7 / 25.2 | 28 | H20R (CAC→CGC) | ygeW | putative carbamoyltransferase YgeW |
| * | NC_000913 | 3,009,530 | 0 | A | G | 38.5% | 31.7 / 36.5 | 39 | D256G (GAC→GGC) | ygeY | putative peptidase YgeY |
| * | NC_000913 | 4,296,060 | 0 | C | T | 37.0% | 44.0 / 55.9 | 54 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,785,984 | 0 | G | C | 36.0% | 58.3 / 55.8 | 50 | R242P (CGT→CCT) | gpmM | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| * | NC_000913 | 446,790 | 0 | G | A | 31.8% | 22.2 / 15.4 | 22 | intergenic (‑124/+25) | yajR/cyoE | putative major facilitator superfamily transport protein YajR/heme O synthase |
| * | NC_000913 | 4,550,676 | 0 | C | T | 29.6% | 34.9 / 15.5 | 27 | T207T (ACG→ACA) | gntP | fructuronate transporter |
| * | NC_000913 | 4,455,028 | 0 | C | T | 28.1% | 44.4 / 18.3 | 32 | M194I (ATG→ATA) | fbp | fructose‑1,6‑bisphosphatase 1 |
| * | NC_000913 | 3,546,603 | 0 | C | T | 26.7% | 43.8 / 17.2 | 30 | L15L (CTC→CTT) | gntT | high‑affinity gluconate transporter |
| * | NC_000913 | 3,850,260 | 0 | T | C | 22.7% | 83.9 / 20.4 | 44 | K156R (AAA→AGA) | uhpA | DNA‑binding transcriptional activator UhpA |
| * | NC_000913 | 3,781,145 | 0 | C | G | 20.6% | 83.5 / 10.9 | 34 | intergenic (+128/‑70) | lldD/trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |