Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F999 I0 R1
|
96 |
52.5 |
3964927 |
95.8% |
3798400 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,438,124 |
T→C |
W140R (TGG→CGG) |
ytfI → |
protein YtfI |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,438,124 | 0 | T | C | 100.0%
| 162.8
/ NA
| 42 | W140R (TGG→CGG) | ytfI | protein YtfI |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/20); total (22/20) |
CAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438078‑4438169
|
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg > 1:3884512/1‑49 (MQ=255)
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg < 1:128926/49‑1 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGat < 1:349755/50‑1 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa > 1:2415456/1‑49 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:1287158/1‑50 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt < 1:1083200/50‑1 (MQ=255)
gTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa < 1:1415197/50‑1 (MQ=255)
aTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGa < 1:857985/50‑1 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa < 1:3602725/50‑1 (MQ=255)
ttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa > 1:2438766/1‑49 (MQ=255)
acGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaa > 1:2139054/2‑49 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa < 1:394754/50‑1 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:1393292/1‑49 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:3419789/1‑49 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAAc < 1:3790739/50‑1 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAAc < 1:3352964/50‑1 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:1087402/1‑48 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 1:3286608/50‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc > 1:1673445/1‑50 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt < 1:2233584/50‑1 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt < 1:370464/50‑1 (MQ=255)
aCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTg < 1:263010/50‑1 (MQ=255)
cAAAACAGACGATTGTATGCCCGGGATATTCTACAGAATAAACAGTCTGa > 1:3741316/1‑50 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGAc < 1:48456/50‑1 (MQ=255)
aaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa > 1:2250632/1‑50 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa > 1:2069063/1‑49 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACAt < 1:388641/50‑1 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 1:306210/1‑50 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 1:1487592/1‑50 (MQ=255)
cAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAc < 1:503027/50‑1 (MQ=255)
cAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAc < 1:158597/50‑1 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:3276423/1‑49 (MQ=255)
aCGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGa < 1:1133229/50‑1 (MQ=255)
cGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGa > 1:3871226/1‑49 (MQ=255)
cGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGa > 1:2556899/1‑49 (MQ=255)
tGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAg > 1:1478674/1‑49 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa > 1:597581/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 1:3069074/1‑50 (MQ=255)
aTGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 1:297050/1‑49 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt < 1:1308420/49‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa < 1:1733955/50‑1 (MQ=255)
gCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa > 1:1614186/1‑49 (MQ=255)
|
CAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438078‑4438169
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
