Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F999 I0 R1
|
91 |
166.1 |
11695708 |
96.8% |
11321445 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,438,124 |
T→C |
W140R (TGG→CGG) |
ytfI → |
protein YtfI |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,438,124 | 0 | T | C | 100.0%
| 489.9
/ NA
| 121 | W140R (TGG→CGG) | ytfI | protein YtfI |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (61/60); total (61/60) |
Only 100 of 121 total aligned reads displayed.
TCAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438077‑4438169
|
tCAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg > 2:4516723/1‑50 (MQ=255)
tCAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg > 2:5280511/1‑50 (MQ=255)
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg < 1:4254641/49‑1 (MQ=255)
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg > 2:4843118/1‑49 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa < 2:5762282/50‑1 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGat < 2:730838/50‑1 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGat < 2:4324749/50‑1 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata < 2:3415363/50‑1 (MQ=255)
aaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGatat > 1:3507541/1‑50 (MQ=255)
aaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGatat > 2:5690121/1‑50 (MQ=255)
aaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGatat < 2:3072119/50‑1 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt < 1:4206214/50‑1 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt < 1:5239257/50‑1 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt < 2:2829376/50‑1 (MQ=255)
ccGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTc > 1:5106485/1‑50 (MQ=255)
ccGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTc > 2:3841377/1‑50 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTc > 2:3081556/1‑49 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTc > 1:2553672/1‑49 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTc > 1:4442904/1‑49 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCt < 1:5218279/50‑1 (MQ=255)
gTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 2:4762732/1‑50 (MQ=255)
gTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:1218933/1‑50 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 2:143682/1‑49 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:4690090/1‑49 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 2:5311077/1‑49 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTAc < 2:4271847/50‑1 (MQ=255)
gAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 2:5817706/1‑48 (MQ=255)
gAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 2:4985048/1‑48 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATGTTCTACAg < 1:331681/50‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACa < 2:4305507/49‑1 (MQ=255)
aTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAg > 1:2304006/1‑49 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa < 2:2346581/50‑1 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGa > 1:1133787/1‑49 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGa > 1:1954956/1‑49 (MQ=255)
ttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa > 1:309137/1‑49 (MQ=255)
ttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa > 2:2626703/1‑49 (MQ=255)
ccGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaa > 1:2566145/1‑49 (MQ=255)
ccGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaa < 1:642953/49‑1 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa < 1:154145/50‑1 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:5671350/1‑49 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAAc < 2:1221964/50‑1 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 2:3658634/1‑48 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACa < 1:5781183/50‑1 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACa < 1:653331/50‑1 (MQ=255)
tAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAg > 2:5491702/1‑50 (MQ=255)
tAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAg > 1:5519703/1‑50 (MQ=255)
aGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGt > 1:1530998/1‑50 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGt < 1:3382094/49‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGt < 2:1759689/49‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGt < 2:2426257/49‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc > 2:2147981/1‑50 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 2:62265/50‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc > 2:1678693/1‑50 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt < 2:17217/50‑1 (MQ=255)
aCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt > 2:813762/1‑49 (MQ=255)
cAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa < 1:1219397/50‑1 (MQ=255)
cAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa < 1:2887026/50‑1 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:3528787/1‑49 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:3615404/1‑49 (MQ=255)
aaaCAGACTATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa > 1:152827/1‑50 (MQ=39)
aaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa < 1:1232678/50‑1 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACAt < 2:361078/50‑1 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACAt < 1:2797287/50‑1 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACAt < 1:5706537/50‑1 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 2:3051987/1‑50 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 1:1679427/1‑50 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 1:4111070/1‑50 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa < 1:2193366/50‑1 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa < 2:5833504/50‑1 (MQ=255)
cAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAc > 1:5806938/1‑50 (MQ=255)
cAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAc < 1:3063675/50‑1 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:3772960/1‑50 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:5349582/1‑49 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg < 2:3734764/50‑1 (MQ=255)
aCGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGa < 1:3797359/50‑1 (MQ=255)
cGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGa > 2:4250451/1‑49 (MQ=255)
cGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGa > 2:5252807/1‑49 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaaa < 2:5293001/50‑1 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:2874713/1‑49 (MQ=255)
aTTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:366992/1‑48 (MQ=255)
ttGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAg < 1:2125321/50‑1 (MQ=255)
ttGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAg < 2:482551/50‑1 (MQ=255)
ttGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAg > 1:806595/1‑50 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa > 1:714115/1‑50 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa > 2:1916423/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa < 2:4910376/49‑1 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa < 2:4649846/49‑1 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 2:4915823/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 1:2093873/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 2:5691602/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt < 1:5252238/50‑1 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt < 1:5814795/50‑1 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt < 2:725617/50‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt > 2:4755359/1‑49 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt > 1:3099342/1‑49 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt < 2:256385/49‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa < 2:3371538/50‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa < 1:4972842/50‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa < 1:1010925/50‑1 (MQ=255)
gCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa > 1:1458543/1‑49 (MQ=255)
|
TCAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438077‑4438169
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
