Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F999 I0 R1
|
74 |
96.3 |
7124520 |
98.5% |
7017652 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,438,124 |
T→C |
W140R (TGG→CGG) |
ytfI → |
protein YtfI |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,438,124 | 0 | T | C | 100.0%
| 337.4
/ NA
| 83 | W140R (TGG→CGG) | ytfI | protein YtfI |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/54); total (29/54) |
CAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438078‑4438169
|
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg > 1:390208/1‑49 (MQ=255)
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg < 1:6573813/49‑1 (MQ=255)
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg < 1:198940/49‑1 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCggg < 1:3399132/49‑1 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCggg < 1:1288852/49‑1 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGat < 1:653050/50‑1 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGat < 1:6431394/50‑1 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata < 1:1013764/50‑1 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:2506699/1‑50 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata < 1:168888/50‑1 (MQ=255)
aaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGatat < 1:6656821/50‑1 (MQ=255)
aaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGatat < 1:4043515/50‑1 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt < 1:3468109/50‑1 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt < 1:2019455/50‑1 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt < 1:1983680/50‑1 (MQ=255)
aCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATAtt > 1:5264032/1‑50 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCt < 1:2316573/50‑1 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCt < 1:5227707/50‑1 (MQ=255)
gTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa < 1:5432044/50‑1 (MQ=255)
gTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:6289937/1‑50 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTAc < 1:2553592/50‑1 (MQ=255)
aaTTTCCGTTAGAGCAAAACAGACGATGGTATGCCCGGGATATTCTACAg < 1:2212405/50‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:5284636/1‑47 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:1180826/1‑47 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:4343112/1‑47 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACa < 1:2295682/49‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACa < 1:2801772/49‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAg < 1:1765571/50‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAg < 1:3826638/50‑1 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAgc > 1:2701520/1‑48 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGa > 1:892628/1‑49 (MQ=255)
ttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa > 1:4547855/1‑49 (MQ=255)
tCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaa > 1:1419036/1‑49 (MQ=255)
tCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaa < 1:2276584/49‑1 (MQ=255)
tCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaa < 1:3453075/49‑1 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaa < 1:5178825/49‑1 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAAc < 1:5190156/50‑1 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAAc < 1:3582500/50‑1 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACa < 1:4614400/50‑1 (MQ=255)
aGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGt > 1:3434205/1‑50 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 1:5251394/50‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc > 1:1160500/1‑50 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 1:3273440/50‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 1:2132885/50‑1 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt < 1:3422899/50‑1 (MQ=255)
aaCAAAACAGACGATGGTATGCCCGGGATATTCTACAGAAAAAACAGTCt < 1:1226871/50‑1 (MQ=255)
aCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTg < 1:744437/50‑1 (MQ=255)
cAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa < 1:1461903/50‑1 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:6660018/1‑49 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGAc < 1:3690619/50‑1 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGAc < 1:181180/50‑1 (MQ=255)
aaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa > 1:2446908/1‑50 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa > 1:3125957/1‑49 (MQ=255)
aaCAGACGATTGTATGCACGGGATATTCTACAGAAAAAACAGTCTGACa > 1:380157/1‑49 (MQ=39)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 1:289053/1‑50 (MQ=255)
cAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAc < 1:1922407/50‑1 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:1965570/1‑50 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:1310764/1‑50 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc < 1:6363759/50‑1 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc < 1:6709915/50‑1 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:5883072/1‑50 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc < 1:2668075/50‑1 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:6061604/1‑49 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg < 1:5714641/50‑1 (MQ=255)
aCGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg > 1:3236523/1‑49 (MQ=255)
aCGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGa < 1:3435836/50‑1 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaaa < 1:6786677/50‑1 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaaa < 1:3864034/50‑1 (MQ=255)
aTTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaaaa < 1:718969/50‑1 (MQ=255)
ttGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAg > 1:9527/1‑50 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAgg < 1:4174469/49‑1 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAgg < 1:2703657/49‑1 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAgg < 1:828997/49‑1 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa > 1:3870927/1‑50 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa > 1:7067496/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGaa < 1:782646/50‑2 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 1:1350552/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 1:1672779/1‑50 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt < 1:5224190/49‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt < 1:3143801/49‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt < 1:4335529/49‑1 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa < 1:1531146/50‑1 (MQ=255)
gCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa > 1:6591008/1‑49 (MQ=255)
|
CAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438078‑4438169
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
