Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F999 I0 R1
|
76 |
100.3 |
7618107 |
97.6% |
7435272 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,438,124 |
T→C |
W140R (TGG→CGG) |
ytfI → |
protein YtfI |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,438,124 | 0 | T | C | 100.0%
| 525.6
/ NA
| 128 | W140R (TGG→CGG) | ytfI | protein YtfI |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (64/64); total (64/64) |
Only 100 of 128 total aligned reads displayed.
CAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438078‑4438169
|
cAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCgg > 1:3809983/1‑49 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCggg < 1:2120017/49‑1 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCggg < 1:2359647/49‑1 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa > 1:5596296/1‑50 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa < 1:4740827/50‑1 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa > 1:2717962/1‑50 (MQ=255)
aaaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa > 1:2371258/1‑50 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGat < 1:2173901/50‑1 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa > 1:5818749/1‑49 (MQ=255)
aaaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGa > 1:6423574/1‑49 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:3866546/1‑50 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:5978465/1‑50 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:5983865/1‑50 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:6292964/1‑50 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:4683179/1‑50 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata < 1:6465066/50‑1 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:2114385/1‑50 (MQ=255)
aaaCCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGata > 1:1618796/1‑50 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCt < 1:4670579/50‑1 (MQ=255)
cGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCt < 1:6223653/50‑1 (MQ=255)
gTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa < 1:3745369/50‑1 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:4376561/1‑49 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:6690162/1‑49 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTAc < 1:7473351/50‑1 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTAc < 1:5382607/50‑1 (MQ=255)
tGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTAc < 1:3460669/50‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTa > 1:6977734/1‑47 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACa < 1:2191120/49‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACa < 1:5073629/49‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACa < 1:3147115/49‑1 (MQ=255)
aaTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAg < 1:6706893/50‑1 (MQ=255)
aTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAg > 1:5660271/1‑49 (MQ=255)
aTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGa < 1:115381/50‑1 (MQ=255)
aTTTCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGa < 1:3093044/50‑1 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa < 1:1062675/50‑1 (MQ=255)
tttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa < 1:5170850/50‑1 (MQ=255)
ttCCGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaa > 1:4781111/1‑49 (MQ=255)
ccGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaa > 1:3113383/1‑49 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:3049652/1‑50 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:795570/1‑50 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa < 1:6338338/50‑1 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaa < 1:524734/49‑1 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaa < 1:6213574/49‑1 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaa < 1:6825901/49‑1 (MQ=255)
cGTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaa < 1:2764249/49‑1 (MQ=255)
gTTAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:5569390/1‑49 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:848731/1‑48 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:2791762/1‑48 (MQ=255)
ttAGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGaaaaaa > 1:6056797/1‑48 (MQ=255)
aGAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGt > 1:4407266/1‑50 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGt < 1:421111/49‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 1:237268/50‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 1:5447036/50‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc < 1:7395765/50‑1 (MQ=255)
gAACAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTc > 1:7114733/1‑50 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt > 1:4751978/1‑50 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt > 1:4833967/1‑50 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt < 1:4054917/50‑1 (MQ=255)
aaCAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCt < 1:959191/50‑1 (MQ=255)
aCAAAACAGACGATTGTATGCCCGAGATATTCTACAGAAAAAACAGTCTg < 1:3771071/50‑1 (MQ=255)
cAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:4168133/1‑50 (MQ=255)
cAAAACAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:6783784/1‑50 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:4429145/1‑49 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:617033/1‑49 (MQ=255)
aaaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGa > 1:2902049/1‑49 (MQ=255)
aaaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa < 1:1365131/50‑1 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACATAAAAAACAGTCTGACa > 1:5614050/1‑49 (MQ=255)
aaCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACa > 1:1165770/1‑49 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 1:6757034/1‑50 (MQ=255)
aCAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATa > 1:2934821/1‑50 (MQ=255)
cAGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAc < 1:3980365/50‑1 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc < 1:4729713/50‑1 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:1302379/1‑50 (MQ=255)
aGACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:1491259/1‑50 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATAcc > 1:4443221/1‑49 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg < 1:11110/50‑1 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg < 1:1241525/50‑1 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg < 1:621415/50‑1 (MQ=255)
gACGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg < 1:7411591/50‑1 (MQ=255)
aCGATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCg > 1:5913319/1‑49 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaaa < 1:4246886/50‑1 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:3548384/1‑49 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:755157/1‑49 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:1789808/1‑49 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:3358988/1‑49 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:3780927/1‑49 (MQ=255)
gATTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:6642727/1‑49 (MQ=255)
gATTGTATGCACGGGATATTCTACAGAAAAAACAGTCTGACATACCGaaa < 1:4875477/50‑1 (MQ=255)
aTTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaaaa < 1:5392134/50‑1 (MQ=255)
aTTGTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGaa > 1:4806726/1‑48 (MQ=255)
gTATGCCCGGGGTATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa > 1:4821831/1‑50 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAgg < 1:3880783/49‑1 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAgg < 1:4682923/49‑1 (MQ=255)
gTATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa > 1:5564201/1‑50 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa < 1:6769586/49‑1 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa < 1:2663014/49‑1 (MQ=255)
tATGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGa < 1:7138381/49‑1 (MQ=255)
aTGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAt > 1:161389/1‑49 (MQ=255)
tGCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGAtt < 1:5381501/49‑1 (MQ=255)
gCCCGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTa > 1:3470108/1‑49 (MQ=255)
|
CAAAAACCGTGAATTTCCGTTAGAACAAAACAGACGATTGTATGCCTGGGATATTCTACAGAAAAAACAGTCTGACATACCGAAAAGGATTA > NC_000913/4438078‑4438169
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
