Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F204 I0 R1	247	174.3	8556966	94.2%	8060661	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,469,656:1	(T)_7→8	100%	coding (526/1332 nt)	gtrS →	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,469,649	1	.	T	94.7%	491.6 / 18.5	152	coding (519/1332 nt)	gtrS	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand): ref base . (3/5); new base T (59/83); total (62/90)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 175 total aligned reads displayed.

AATGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑T‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACA  >  NC_000913/2469550‑2469743

aaTGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTa                                                                                                    <  1:3396331/100‑1 (MQ=255)

  tGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t                                                                                                <  1:508098/100‑1 (MQ=255)

   gTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑t                                                                                              <  2:239361/100‑1 (MQ=255)

   gTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑t                                                                                              >  2:3406792/1‑100 (MQ=255)

       gCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttt                                                                                          >  1:180879/1‑100 (MQ=255)

        catcatTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑tttttt                                                                                         >  2:850435/1‑99 (MQ=255)

        catcatTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑tttttt                                                                                         <  2:350354/100‑2 (MQ=255)

        catcatTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑tttttt                                                                                         >  1:110590/1‑99 (MQ=255)

         atcatTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttttc                                                                                        <  2:2343877/100‑3 (MQ=255)

          tcatTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttttcg                                                                                       <  1:606338/100‑4 (MQ=255)

          tcatTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttttcg                                                                                       <  2:317641/100‑4 (MQ=255)

            atTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGTTTTATTAATTAACATGCAAAAACAATAAATCTATGCTTTTTCTA‑t‑t‑tttttttat                                                                                      >  1:2591839/1‑95 (MQ=255)

            atTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttttcgtt                                                                                     <  1:3698330/100‑6 (MQ=255)

            atTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttttcgtt                                                                                     <  2:3228764/100‑6 (MQ=255)

             ttCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAACAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTg                                                                                    <  1:2290998/100‑1 (MQ=255)

             ttCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑TCT‑TTTTT‑CGTTg                                                                                    <  2:4218731/100‑1 (MQ=255)

              tCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGc                                                                                   <  1:4199595/100‑1 (MQ=255)

              tCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGc                                                                                   <  2:596939/100‑1 (MQ=255)

              tCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGc                                                                                   <  2:3757215/100‑1 (MQ=255)

               cTATCAAGAGTAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAATACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCt                                                                                  <  1:1676805/100‑1 (MQ=255)

               cTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGTTGTTTTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCt                                                                                  >  2:2677025/1‑100 (MQ=255)

               cTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCt                                                                                  <  2:3525927/100‑1 (MQ=255)

                tATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttttttttttt                                                                                  >  1:514792/1‑91 (MQ=255)

                tATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑t‑t‑ttttttctttttt                                                                                  >  1:3303550/1‑91 (MQ=255)

                 aTCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCtaa                                                                                >  2:3979748/1‑100 (MQ=255)

                  tCAAGGGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑T‑TGTTTTT‑CGTTGCtaa                                                                                <  1:839833/99‑1 (MQ=255)

                   cAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCtaata                                                                              >  2:234566/1‑100 (MQ=255)

                    aaGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATGAATCTCTGCTTTTGATATT‑T‑TTTTT‑CGTTGCtaataa                                                                             >  1:2877994/1‑100 (MQ=255)

                    aaGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCtaataa                                                                             >  2:2641624/1‑100 (MQ=255)

                     agagCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑TGTTGCTaataat                                                                            >  1:1713237/1‑100 (MQ=255)

                     agagCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑T‑T‑TTTTT‑CGTTGCTAataata                                                                           >  1:2415694/1‑100 (MQ=255)

                     agagCAAATAATTATAATTTTACTTCCATTTTTGTTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑T‑T‑TTTTTGCGTTGCtaata                                                                              <  1:2740074/98‑1 (MQ=255)

                      gagCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTaataat                                                                            <  1:3166269/99‑1 (MQ=255)

                           aaTAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCtattattattt                                                                        >  2:726751/1‑96 (MQ=255)

                           aaTAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTAc                                                                      <  2:1427091/100‑1 (MQ=255)

                            aTAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACt                                                                     <  2:665128/100‑1 (MQ=255)

                             tAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTg                                                                    >  2:1149446/1‑100 (MQ=255)

                               gTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCt                                                                  <  1:2141071/100‑1 (MQ=255)

                               gTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCt                                                                  <  2:19226/100‑1 (MQ=255)

                                 tataATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTa                                                                 >  2:3181957/1‑99 (MQ=255)

                                     atattccttccATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTAGT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTaaaaa                                                             <  1:2813226/96‑1 (MQ=255)

                                     aTTTTCCTTCCATTTTTTGTGTATTAAAAAAAAAAAAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAAt                                                            <  1:89736/100‑1 (MQ=255)

                                      ttttCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATc                                                           <  1:2932127/100‑1 (MQ=255)

                                          ccttccATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAAtt                                                       <  2:2206608/100‑1 (MQ=255)

                                           cttccATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAAttt                                                      >  1:1189063/1‑100 (MQ=255)

                                           cttccATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAAttt                                                      >  2:4257763/1‑100 (MQ=255)

                                            ttccATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTta                                                     <  2:1743366/100‑1 (MQ=255)

                                            taccATATTTGGTGTATTCATTAACATGCAAAAACAATACATCTATGCTTTTTCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAAtn                                                       <  1:1061525/96‑2 (MQ=255)

                                             tccATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTtat                                                    <  1:1930644/100‑1 (MQ=255)

                                              ccATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTtata                                                   >  1:3071792/1‑100 (MQ=255)

                                               ctcttttGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTatat                                                  <  2:3862072/97‑1 (MQ=255)

                                               cATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑TGTTTTTAATAATATCTACTGCTAAAAATCAATTTatat                                                  >  1:382454/1‑100 (MQ=255)

                                               cATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTatat                                                  >  1:3138903/1‑100 (MQ=255)

                                               cATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTatat                                                  >  2:4000930/1‑100 (MQ=255)

                                               cATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTatat                                                  <  1:179432/100‑1 (MQ=255)

                                               cATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑T‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATAtt                                                 <  2:4106673/100‑1 (MQ=255)

                                               cATTTTTGGGGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAAt                                                        <  1:1952628/94‑1 (MQ=255)

                                                aTTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑TTTTTTTTTTAATATCTACTGCTAAAAATCAATTTATAtt                                                 >  1:2079088/1‑100 (MQ=255)

                                                    ttGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAAcc                                             >  1:2180633/1‑100 (MQ=255)

                                                     tagtgtATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAAcc                                             <  1:430504/97‑1 (MQ=255)

                                                      ggTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAAcccc                                           >  1:1469244/1‑100 (MQ=255)

                                                        tgtATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCAc                                         <  2:1319443/100‑1 (MQ=255)

                                                         gtATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACt                                        >  2:550382/1‑100 (MQ=255)

                                                           aTTCATAAATATGCAAAAACAATTACTCTATTCTTTTTCTA‑T‑TCTTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACt                                        <  2:1624159/98‑1 (MQ=255)

                                                            ttCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATGTACTGCTAAAAATCAATTTATATTAACCCCACTAAt                                     >  2:2997065/1‑100 (MQ=255)

                                                            ttCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAAt                                     <  1:464795/100‑1 (MQ=255)

                                                              cATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATa                                    >  1:3058944/1‑99 (MQ=255)

                                                                ttAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAgtg                                 <  2:789200/100‑1 (MQ=255)

                                                                 tAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CTTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAgtg                                 <  1:3721247/99‑1 (MQ=255)

                                                                 tAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAgtgt                                >  1:746966/1‑100 (MQ=255)

                                                                 tAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAgtgt                                >  2:1056864/1‑100 (MQ=255)

                                                                 tAACATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAgtg                                 >  2:227050/1‑99 (MQ=255)

                                                                   aCATGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTAt                              <  1:84974/100‑1 (MQ=255)

                                                                     aTGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTAtt                             >  1:973247/1‑99 (MQ=255)

                                                                      tGCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTCCTAAAAATCAATTTATATTAACCCCACTAATAgtgtcctta                           >  1:3511196/1‑95 (MQ=255)

                                                                      tGCAAAAACAATAAATCTATGCTTTTGCTA‑T‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCat                          >  1:1012723/1‑100 (MQ=255)

                                                                       gCAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCat                          >  2:4233079/1‑100 (MQ=255)

                                                                        cAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑TTTTTTTTATAATATCTACTGCTAAAAATTAATTTATATTAACTTCACTAATAGTGTAttta                           >  1:307584/1‑96 (MQ=255)

                                                                        cAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑TTTTTTTATTAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCat                          >  1:1070964/1‑99 (MQ=255)

                                                                        cAAAAACAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCata                         >  2:2736510/1‑100 (MQ=255)

                                                                          aaaaCAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCata                         <  1:3305167/98‑1 (MQ=255)

                                                                              cAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCatattatat                   >  1:3090092/1‑100 (MQ=255)

                                                                              cAATAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCatattatat                   <  2:2437135/100‑1 (MQ=255)

                                                                                aTAAATCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATAttt                 <  2:456700/100‑1 (MQ=255)

                                                                                   aaTCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATAtttttt              <  2:1394312/100‑1 (MQ=255)

                                                                                    aTCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCACACTAATAGTGTATTTATATTATAttttttt             >  1:4167976/1‑100 (MQ=255)

                                                                                     tCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTTCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATAtttttttt            >  1:1418045/1‑100 (MQ=255)

                                                                                     tCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATAtttttttt            <  1:630800/100‑1 (MQ=255)

                                                                                     tCTATGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATAtttttttt            <  2:190077/100‑1 (MQ=255)

                                                                                      cTATGCTTTTTCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTg           <  1:444567/100‑1 (MQ=255)

                                                                                        aTGCTTTTACTACT‑T‑TTTTT‑CCTACCTAATAATAGCTATTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATACTATATTTTTTTTGAt         <  1:4019217/100‑1 (MQ=255)

                                                                                         tGCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATA‑TTTTTTTGATAg       <  2:3613295/100‑1 (MQ=255)

                                                                                          gCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTg           <  1:1256054/96‑1 (MQ=255)

                                                                                          gCTTTTGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAg       <  2:1533089/100‑1 (MQ=255)

                                                                                            ttttGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGac     <  1:7863/100‑1 (MQ=255)

                                                                                             tttGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGaca    <  1:2977232/100‑1 (MQ=255)

                                                                                             tttGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCAACTAATAGTGTATTCATATTATATTTTTTTTGATAGaca    <  1:2970170/100‑1 (MQ=255)

                                                                                              ttGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGacac   <  2:3803375/100‑1 (MQ=255)

                                                                                              ttGCTATT‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGacac   <  2:3803374/100‑1 (MQ=255)

                                                                                               tGCTATT‑T‑TTTTT‑CTTTTCTAATAATATCTACTGCTAACAATCAATTTATATTAACTCCATTAATTGTGTATTTATATTATATTTTTTTTTTTAcacaca  >  1:3920295/1‑100 (MQ=255)

AATGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTA‑T‑T‑TTTTT‑CGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACA  >  NC_000913/2469550‑2469743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A