Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F13 I0 R1
|
168 |
14435.1 |
8204878 |
98.4% |
8073599 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,367 |
T→G |
23.6% |
F225V (TTT→GTT) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,367 | 0 | T | G | 23.6%
| 181.8
/ 27.4
| 139 | F225V (TTT→GTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (18/85); new base G (33/2); total (52/87) |
| Fisher's exact test for biased strand distribution p-value = 1.56e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 139 total aligned reads displayed.
CACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTC > NZ_CP022686/3734235‑3734503
|
cacaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTggg > 3:807406/1‑137 (MQ=255)
cacaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTggg > 3:297124/1‑137 (MQ=255)
acaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCTTTTTACTGATGATCAGCGCCGTCGGTGGTTTGgccgc > 5:582547/1‑140 (MQ=255)
acaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGgccgc > 5:582548/1‑140 (MQ=255)
caGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTGATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTAGTGATGAGCAGCGCCGTCGGGCGGGTGgcgg > 1:62795/1‑136 (MQ=255)
aGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTTTGgccgc > 3:5715/1‑138 (MQ=255)
aGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGGTGGgcgccc > 5:827977/1‑140 (MQ=255)
aGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGgccccc > 7:620589/1‑140 (MQ=255)
cGGCCCGGTCATTATGGCGTGAGATATCAATGCCTGGAGCCGTAGAAGGAGGAACGCGAGAAATCGCTTTGCGCGGGAAATGTCGCTCCGCCAGGTGCGTATTACTGATGATCAGCGCCGTCGAGCGTTATGccgccccc > 6:966403/1‑138 (MQ=255)
cGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGccgccc > 3:554002/1‑138 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGccgccccg > 1:1032090/1‑136 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGccgcccgc > 2:815741/1‑138 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 5:113835/140‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGAtt < 7:484163/140‑1 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTTGGCGCCcgcgcggg > 1:252519/1‑136 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTTGACGCCCCCGCGGttt > 5:466190/1‑140 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTTGGCGCCCGCGCGAt > 4:800037/1‑138 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCcgcgcgct > 2:735665/1‑136 (MQ=255)
cATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCTCTAttt > 2:567022/1‑138 (MQ=255)
tATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCCTTTGGCCGCCCCCACGAtttttttt > 8:466803/1‑140 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGtttt < 6:875072/140‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGtt < 4:813026/138‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGAGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGtttt < 8:904935/140‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGACGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGCTCAGCGCCGTAGGGCGTTTTGGCGCACGCTCGGATTTGtttt > 8:836471/1‑140 (MQ=255)
ggAGATTTCATAGCCGGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTAGCTGCGCCAGGTGCTTTTTACTGATGATCAGCGCCGTCGGTCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg < 6:468810/140‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGCACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTAc < 4:876159/138‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTAc < 2:317628/138‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGGTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg < 7:16931/140‑1 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTTTGGGCGCCCGCTGGATTTTGTTTTATAACGt > 6:802257/1‑140 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTTGACGGCCGCGCGATTTTTTTTTGTAACgg > 6:796994/1‑139 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGCGTTTGGGCGCCCCCACGATTTTTTTTTATAcc > 3:243001/1‑138 (MQ=255)
cgaTTTCAATGCCTGGAGCCGTTGAATGATGAACGAGTGATATCGCTTTGCGCGTGAAATGGCGCTGCGGCAGGTGCGTTTTACTGATGATCAGCGCCGTCGTGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTagag < 2:1054086/137‑4 (MQ=255)
agaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCg > 4:563667/1‑138 (MQ=255)
aTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTg < 2:245279/138‑1 (MQ=255)
tCAATGCCTGGAGCGGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGGGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTg < 5:712714/140‑1 (MQ=255)
ccTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGGCGCCCCCTCCGATTTGTTTTATAAACTGGTCTGGAccta > 7:272097/1‑137 (MQ=255)
tgCCGTAGAAGGATGAACGCGTTATATCTCTTTGCGCGGGAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 2:96547/137‑1 (MQ=255)
cgCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 5:167099/139‑1 (MQ=255)
cgCCGTAGAAGGATGAACGCGGTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 3:499136/137‑1 (MQ=255)
aGCCGTAGAAGGATGAACTCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 1:953673/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATCTCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATTATCAGCGCCGGCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGGCAGCGa < 8:296000/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 3:805840/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 1:293800/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGAGCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 8:737572/140‑1 (MQ=255)
aGCCGTAGAAGGAGGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 3:288587/138‑1 (MQ=255)
cGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGGCCGCTCGATTTTGTTTTATACCCGGGTATGAACGTCAGCCaa > 4:63180/1‑138 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGCCGCCCGCGCGAATTTTTTTTATTCCGTGGGCTGAAAGGAAGCGAAGCtt > 7:445177/1‑140 (MQ=255)
tAGAAGGATGAACGAGTGATATCTCTTTGCGCGGGAAATGTCGCTGCGCCTGGTGCTGTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCATCGAAGCtt < 6:513027/140‑1 (MQ=255)
gAAGGATGAACTCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCCCTCGCTTTTGTTTTATACCGTGGGCTGCACGTCAGCGAAGcgg > 2:216472/1‑136 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGCCCGCGCGGTTTTTTTTTATACCGTGGTGTGAACGTAAGCCAAGCTTCt > 6:618130/1‑140 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCTGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 8:105801/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGTGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 3:873582/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 4:350969/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 1:997072/138‑1 (MQ=255)
gAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGCGATTTTTTTTTGTACCCGGGTGTGCACGTCAGCGAAGCTTCTGTTCt > 2:373690/1‑138 (MQ=255)
gAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGCGTTTGGCCGCCCCCCAGCTTTTGTTTTATTCCCGTGTAGGTACGTCAGCGAAGCTTcgttagg > 2:785116/1‑132 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGGGGTTGGGCGCCCGCGCGATTTTTTTTTTTTACGGGGTGTGAACGTCAGCGAAGCGTCTGTTATGGt > 5:810156/1‑140 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGAGCTTTTGTTGTATACCCTGGTGTGAACGTCAGCGCAGCAGCTGTAATGGt > 8:272901/1‑140 (MQ=255)
cgcgTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGCGATTTTTTTTTTTTACGGGGTGTGGAACTCAGCGCACCGTCTGTAATGGt > 3:204661/1‑138 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcg < 1:919205/138‑1 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcg < 1:148224/138‑1 (MQ=255)
tataTCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGCGTTTTGCCGCCCGCTGGATTTTGTTTTTTAACGTGGGCTGAACGTAAGCGGAGCTTGTGTTCTGGTTAcgagc > 6:757983/1‑140 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 3:134806/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 4:732403/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTGGCCGGCCGCTCCATTTTTTTTTATAACGTGGTCAGTACGGCAGCCAAGCATATGTACTGGTTAagcc > 2:963995/1‑137 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGAGGATCAGCGCCGTCCGGCGGTTTGCCGCCCCCTCGATTTTGTTTTCTACCGTGGGAGTTCCGTCAGCGAAACCTCTGTAATGGTTAagcg > 2:963991/1‑138 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCt < 1:1010276/138‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTc < 6:90690/140‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTGCCGCCCCGGCGTGTTTGTTTTATTCCGGTGGATGGACGTAAGCGAAGCGTCTGGTCTTGTTACgcccgcgta > 6:257853/1‑137 (MQ=255)
gCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTcc < 7:163097/140‑1 (MQ=255)
tttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGCCGCCCCCTCGCTTTTTTTTTTTAAGGGGGTATGAACCACAGCGAACCGTCAGGAATGGTTAAACGCGCCTCCgc > 6:652645/1‑139 (MQ=255)
gcgcGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGAt < 1:721306/138‑1 (MQ=255)
gcgGGAAATGTCGCTGCGCCAGGTGCGTGTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATcaca < 7:161408/140‑1 (MQ=255)
gTCGCTGCGCGAGGGGCGTTTTACTGAAGATCAGCGCCGTCTGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTGCGATCACAATCCGCt < 3:742903/138‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTAc < 7:466803/140‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTAc < 5:69177/140‑1 (MQ=255)
cTGCGCCAGGTGCGTTTTACTGATGAGCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTTCCGTGGTCTGAACGTCAGCGCAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGt < 8:93524/140‑1 (MQ=255)
tGCTCCAGGTGCGTTTTACTGATGATCAGAGCCGTCGGGCGTTTGTCCGCCCGCTCGATTTTGTTTTATACCGTTGTCTGAACGTCAGCGAAGCTTCTGTACTTGTTACGCGCGCTTCCGATCACAATCCGCTACTCGtt < 6:582547/140‑1 (MQ=255)
tGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGtt < 6:582548/140‑1 (MQ=255)
ccAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTGGGCGCCCGCGCGATTTTTTTTTATAACCGGGTGTGAACGTCCGCGCAGCGGCTGTTATGGGTACGCGCGCGTGCGCTGACAAAACGCGAATCGGTGa > 4:326696/1‑138 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAAtt < 6:876859/140‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGGCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGaa < 1:335424/138‑1 (MQ=255)
tGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGt < 6:685308/140‑1 (MQ=255)
ttACTGATGATCAGCGCCGGCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTATGAACGTCAGCGAAGCTTCTGGACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGc < 8:451740/140‑1 (MQ=255)
cTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAg < 8:535159/140‑1 (MQ=255)
tgatgaTCAGCGCCGTCGTGCGTTTGGCCGCCAGCTCGATTTTGTTTTCTACCGTGGTCTTAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATGCGCTACTCGTTGAATTCAGTCCCGGCAAGc < 7:135371/140‑1 (MQ=255)
atgatCAGGGCCGTCGGGCGGGTGGCCGCCCGCTCGATTTTGTTTTCTAGCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 5:254895/140‑1 (MQ=255)
atgatCAGCGCCGTCGGGCGTTTTGCCGCCCGCTCGATGTTGTTTTCTACCTTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCGGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 7:719301/140‑1 (MQ=255)
atgatCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 7:817524/140‑1 (MQ=255)
tgatCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTg < 5:350653/140‑1 (MQ=255)
gatCAGCGCCGTCGGGCGGTTGGGCGCCCGCGCGATTTTGTTTTGTACCGGGGTCTGAACGTCAGCGCAGCTTCTGTACTGGTTACGCGCGCGGGCGATCACCATCCGCTACTCGTTGAATTCAATCCCGGCCAGccg > 4:946872/1‑137 (MQ=255)
gcCGTCGGTCGTTTGGCCGCCCGCGCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 3:407741/138‑1 (MQ=255)
gcCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 6:308622/140‑1 (MQ=255)
gcCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 4:487392/138‑1 (MQ=255)
gcCGTCGGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCTCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 6:12936/140‑1 (MQ=255)
cggcGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 3:717115/135‑1 (MQ=255)
cGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAgg < 5:618130/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 6:2130/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 2:605699/138‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGGTTTCTACCGTGGTCTGAACGTCAGCGAAGATTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 3:478084/138‑1 (MQ=255)
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CACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTC > NZ_CP022686/3734235‑3734503
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
