Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F13 I0 R1
|
284 |
16785.3 |
10492142 |
98.3% |
10313775 |
134.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,367 |
T→G |
18.4% |
F225V (TTT→GTT) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,367 | 0 | T | G | 18.4%
| 296.0
/ 26.9
| 183 | F225V (TTT→GTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (29/115); new base G (33/4); total (64/119) |
| Fisher's exact test for biased strand distribution p-value = 7.04e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 187 total aligned reads displayed.
CACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATG > NZ_CP022686/3734232‑3734501
|
ccacAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTGTACTGATGATCAGAGCAGTGAGGC‑GGTTgg > 6:665224/1‑138 (MQ=255)
cacaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATTCACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑Gttttgg > 5:304944/1‑135 (MQ=255)
cacaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTGTggg > 4:1243007/1‑137 (MQ=255)
acaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGgcc < 6:563982/138‑1 (MQ=255)
acaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCAGTAGAAGGATGAACGCGTTATATAGCTTTGCGCGGGAAATGTCGCTGCGCCTGGTGAGTTATAATGATGATCAGCGCCGTCGCTG‑GTTTGgcc > 5:754089/1‑138 (MQ=255)
caGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGGTGgccc > 2:163627/1‑137 (MQ=255)
aGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGGACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGGTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGgccgc > 4:746155/1‑138 (MQ=255)
aGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GGTTGggcgc > 6:68327/1‑138 (MQ=255)
gCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGgccgcc < 3:1272807/138‑1 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGG‑GTGTggcggcgccg > 7:52381/1‑134 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGTTGGgcgccccc > 3:1334128/1‑136 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGTTGGccgcccgc > 5:138250/1‑138 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGAATAACGCGTTATATAGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGCacccccgc > 2:579312/1‑138 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GTTTTGccgcccgcgcc > 4:1319403/1‑135 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GGTTGGCCGCCcgcgcg > 7:906135/1‑138 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGGTTTgcccgccccgcg > 6:1108377/1‑134 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGTTTGCCGCCcgcgcg > 1:1071692/1‑138 (MQ=255)
gttCATTATGGCGTGAGAAGTCAATGCCTGGAGCCGGAGAAGGATGCTCGCGTTATATCGCTTGGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTGTACTGATGATCCGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGa < 5:650162/136‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGa < 1:346543/138‑1 (MQ=255)
ggTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGa < 1:98077/138‑1 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GATTGGCCGCCCGCTCGAt > 8:924409/1‑138 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCCGGC‑GTTTGTCCGCCCGCTAGAt > 2:775383/1‑138 (MQ=255)
ttATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTg < 7:275209/138‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGtt < 4:919717/138‑1 (MQ=255)
gtgagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTa < 1:427399/136‑1 (MQ=255)
gggAGATTTCTATGTCTGGAGACGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTa < 8:799845/138‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCTTTATATCGCTTTGCGCGGGAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTa < 7:540415/138‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTa < 2:1191289/138‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTa < 8:1122981/138‑1 (MQ=255)
gtataTTTCAATGCCTGTCTCGGTTGAAGGAGGAAGCCGTTAAATCGCTTTGCGCGGGAAATGTCGCGTGTCGAGGTGGGTTTTACTTATGTTCTGCGCCGTCGGGG‑GTTTGGCCGCCGGCTCTATTTTGTTTT‑GTAc < 6:307607/134‑1 (MQ=255)
ggAGATTTCAATGCCTGTAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GTTTGGACGCCCGGGCGGTTTTTTTTT‑CTag > 2:594649/1‑137 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAATGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTaa < 4:389279/138‑2 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGTAAGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTAc < 6:1248128/138‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GTGTTGCCGCCCCCTGGCTTTTGtttttttc > 6:595966/1‑134 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTAc < 3:17967/138‑1 (MQ=255)
aTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTg < 2:101997/138‑1 (MQ=255)
aTTTCAATGCCTGGAGCAGTAGAAGTATGAACGCGTTATATCGCTTTGCGCTGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTg < 1:565997/138‑1 (MQ=255)
ttCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGt < 8:412384/138‑1 (MQ=255)
tCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCGGCGCCAGGTGCGTTTTAGTGATGATCAGCGCCGTCGGGC‑GTGTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTc < 4:636309/138‑1 (MQ=255)
aaTGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTg < 8:219699/138‑1 (MQ=255)
tGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGATATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGaa < 2:1130218/138‑1 (MQ=255)
gCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAAc < 6:191700/138‑1 (MQ=255)
cgCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 1:1050280/137‑1 (MQ=255)
aGCCGTAGACGGATGAACGCGATATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGAGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 7:172811/138‑1 (MQ=255)
aGCCGTAGAATGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATTATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 2:1002119/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATCTCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGGGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 5:458085/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCGAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 5:854347/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 7:486606/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 5:182059/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCGCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 8:479296/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCGTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGc < 3:693897/138‑1 (MQ=255)
gCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGTGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCg < 3:91941/138‑1 (MQ=255)
gCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GTTTTGCCCCCCGCTCGATTTTTTTTT‑ATTCCGTTGTCTTAAAGtaatcg > 2:490381/1‑133 (MQ=255)
ccGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGGCTGAACGTCAGCGa < 3:1297947/138‑1 (MQ=255)
cGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGaa < 4:298011/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCGTTGCGCTGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGc < 7:1018591/138‑1 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GTTTGGGCGCCCGCTCGAATTTGTTTT‑GTACCGGGGTGTTAAAGTCACCGaaccgt > 2:109907/1‑134 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGTTGGCCGCCCGCGCGAGTTTTTTTT‑ATACCGTGGTCTGAAAGTCAGCGAAGCtt > 2:101722/1‑138 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 4:860522/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGAGCAGCGCCGTCGGGC‑GGTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 1:268746/138‑1 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GGTTGGGCGCCCGCAGGGTTTTTTTTT‑TTAACGGGGTCTGGACGTGAGCGAAACGTATGTTCTg > 8:179032/1‑138 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGTTGGCCGCCCGCGCGATTTTTTTTT‑ATACCGGTGTCTGAACCTAAGCGCAGCGTATGTagct > 1:784555/1‑135 (MQ=255)
cgcgTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGTTTGACGCCCGCGGGATTTTTTTTT‑CTACCGAGGTGAGAAAGTAAGCGAAGCATATTTACTGGt > 6:613842/1‑138 (MQ=255)
tataTCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GGTTGGCCGCCCGCGGGAGTTTGTTTT‑GTACCCTGGGCGGAACGAAAGCGAAGCGTCTGTACTGGtttagc > 1:628291/1‑134 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 3:411410/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 5:1108377/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGTTGGCCGCCCCCGCGCTTTTGTTTT‑CTAACGGGGGCTGAACGTCACCGAAGCGTCTGGACTGGGTAagcg > 3:971316/1‑138 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTGTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 6:1123677/138‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCt < 7:236630/138‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCACCCGCGATTTTTTTTT‑CTAACGTGGTCTGAACGGCAGCGCAGCTTGTTGAGTGGTTAAgcgcgcg > 4:1280512/1‑137 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGGGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCt < 5:1003546/138‑1 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCg < 1:415527/138‑1 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GGGTGGCCGCCCCCGCGAGTTTGTTTT‑AATCCGTGGTGTGAACGTCAGCGCAGCGGCTGGTCTGTGTTCGCGCCCTTcgc > 6:457071/1‑136 (MQ=255)
cgcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGG‑GGTTGGGCGCCCGCGGGAGTTTGCTTT‑GTACCGGGGTCTGAACGTCAGAGCAGCTTGTGTAGTGGTTACGCGCGCGTcccctc > 5:1268700/1‑134 (MQ=255)
aaTGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATcc < 5:1255262/138‑1 (MQ=255)
aTGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCg < 5:598674/138‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 4:1133095/138‑1 (MQ=255)
ccAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGa < 4:317989/138‑1 (MQ=255)
ccAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGa < 3:1106760/138‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCGCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGTTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGaa < 5:581704/138‑1 (MQ=255)
ggagTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCa < 7:191219/135‑1 (MQ=255)
aCTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGc < 3:525200/138‑1 (MQ=255)
atgatCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGc < 2:1319015/138‑1 (MQ=255)
tgatCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGcc < 1:163627/138‑1 (MQ=255)
tgatCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGcc < 2:677734/138‑1 (MQ=255)
tgatCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGcc < 6:876778/138‑1 (MQ=255)
tgatCAGCGCCGTATGTC‑TTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGTACGTCTGCGTAGCTTCTGTACTGGTTCAGCGCGCTTCCGATCACTATCCGCTACTGGTTGAATTCAGTCGCGGCAAGcc < 7:347640/138‑1 (MQ=255)
tgatCAGCGCCGTAGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTTGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGcc < 6:1116551/138‑1 (MQ=255)
gatCAGCGCCGTCGGGC‑GTTTTGCCGCCCCCGCGATTTTTTTTTATTACCG‑GGTCTGAAAGTCAGCGAAGCTTCTGTTCTGGTTTAGCGCGCGTACGATAACAAAACGCGAATCGTTTAATTAATTACCCGCAAAccc > 4:1049497/1‑137 (MQ=255)
gatCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 3:1152071/138‑1 (MQ=255)
atcgcCGGCGGGC‑GTTTGGCCGACCGCGAGAATTTGTTTT‑CTTCCGTGTTCTGAACGTCAGCTAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGata < 4:269159/136‑1 (MQ=255)
aGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGata < 8:1044587/138‑1 (MQ=255)
aGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGata < 8:1210500/138‑1 (MQ=255)
aGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGata < 1:957221/138‑1 (MQ=255)
aGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTAT‑CTCCCGTGGGCTGAACATCACCGAAGCTTCTGTACTGGGTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGata < 3:107911/138‑1 (MQ=255)
gcCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 3:454543/138‑1 (MQ=255)
gcCGGCGGGC‑GTATGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 1:1348582/138‑1 (MQ=255)
cggcGGGC‑GTTTGGCCGCCCGCTCGATTTTGTGTT‑TTACCGTGGTCTGATCGTCAGCGAAGCATCAGTACTGCTTATTAGCGCTACCGATCACAATCCGCTACTCGTAGAATGAAGGCCCGGCAAGGCTGataaataa < 6:1189189/135‑1 (MQ=255)
gC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 6:381048/138‑1 (MQ=255)
gC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 1:1222713/138‑1 (MQ=255)
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CACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGC‑GTTTGGCCGCCCGCTCGATTTTGTTTT‑CTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATG > NZ_CP022686/3734232‑3734501
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
