Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F2 I0 R1
|
184 |
7301.6 |
8720326 |
98.4% |
8580800 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,367 |
T→G |
18.5% |
F225V (TTT→GTT) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,367 | 0 | T | G | 18.5%
| 263.7
/ 23.1
| 167 | F225V (TTT→GTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (27/106); new base G (28/6); total (55/112) |
| Fisher's exact test for biased strand distribution p-value = 2.82e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 168 total aligned reads displayed.
CTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAG > NZ_CP022686/3734230‑3734505
|
cTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGgtt > 3:417727/1‑140 (MQ=255)
accacAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGgc > 4:29425/1‑140 (MQ=255)
accacAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGgc > 7:528299/1‑140 (MQ=255)
cacaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCGGCGCCGTC‑GGGGGGTTGggcg > 2:407573/1‑140 (MQ=255)
cacaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGgccg > 8:833916/1‑140 (MQ=255)
acaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGgccgc < 8:755629/140‑1 (MQ=255)
acaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGATTTCCGCGGTAAATGTCGCTGCGCAAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGGGTTTGgccgc > 4:861967/1‑140 (MQ=255)
cGGCCCGGTCATTATGGCGGGAGCTTTCAATGCCTGGAGCCGTAGAAGGAGGAACGCTTTATATCGCTTAGCGCGGGAAAGGTCGCTGCGCCAGGTGCGTGTTACTGATGATCAGCGCCGTG‑CGGCGGGTGGgcggccgg > 3:212398/1‑139 (MQ=255)
cGGCCCGGTCATTATGGCGGGAGATTTCAATGCATGGAGCCGTAGAAGGATGAACGCGTTTTATCGCTTTGCGCGGGAAATGTCTCTGCTCCAGGTGCGTTTTACTGATGATCAGCGCCGTA‑GGGCGTGTTGccgccccc > 3:991927/1‑138 (MQ=255)
ggCCCGGGCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACAGATGATCAGCGCCGTC‑GGGCGTTTGGccgcccg < 5:195158/138‑1 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGGGTTTGGcctcccgc > 5:913997/1‑138 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCAGGAGCAGTAGAAGGATGAACGCGTTAAATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTAACTGATGATCAGCGCCGTC‑GGGCGGTTGGgggcccgc > 6:412295/1‑138 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTG‑GGGCGGTTGGgcgcccgcgaggt > 1:761676/1‑135 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTTGGCGCCCGCTCg > 5:536716/1‑138 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGGTTTGCCCCCCCCGCGaa > 2:443825/1‑139 (MQ=255)
cGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGAGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGGGGTTGGCCGCCCGCTCg > 6:511155/1‑138 (MQ=255)
gggcATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGAtt < 2:262535/137‑1 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGGTTGGGGGGCCGCGCGAttt > 7:1025175/1‑140 (MQ=255)
tCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGAtttt < 2:66462/140‑1 (MQ=255)
tCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGAtttt < 8:277673/140‑1 (MQ=255)
cATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCCAtat > 6:274372/1‑136 (MQ=255)
ttATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGtt < 8:722063/140‑1 (MQ=255)
ggCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGtttt < 5:507522/138‑1 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATtttttttt > 8:266663/1‑136 (MQ=255)
cGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGtttt < 7:266663/136‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGGCGCCCGCTCGATTTTGTTTTGTAcc > 2:1022873/1‑140 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTAcc < 3:76078/140‑1 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGGGGTTGGGCGCCCGCGCGgttttgttttgttgcgt > 4:329509/1‑133 (MQ=255)
gagaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTTGCCGCCCGCACGATTTTGTTTTATACCGt > 7:497392/1‑140 (MQ=255)
ttCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGAtttt > 2:704436/1‑123 (MQ=255)
ttCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGAtttt < 1:704436/123‑1 (MQ=255)
aTGCCTGGATCCTTAGAAGGATTTACGCGTTATATCTCTTTGATCTGGAAATGTCGCTGAGCCAGGTTCTTTTTACTGATGATATGCGGCGGC‑TGGCGTTTGGCCGGCCGCGCGATTTTGTTTTCTACCGTGGTCTGAAc < 8:557679/140‑1 (MQ=255)
aggagttgAAGGATGATCGGGTTATATCGCTTTGCGCGGGTTATGTCGCTGCTCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 1:186558/133‑1 (MQ=255)
aGCCGTAGCAGGATGAACGCGTTATATCGCGTTGCGCTGGAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGACGCCCGCGCGATTTTGTTTGCTACCGTGGTCTGAACGTCAGCGa < 4:667037/140‑1 (MQ=255)
aGCCGTAGAAGGATGCACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 4:967634/140‑1 (MQ=255)
aGCCGTAGAAGGATGCACGCGTTATATCGCTTTGCGCGGGAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGGC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 2:477885/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTTTATCGCTTTTCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 5:252009/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 5:813161/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 8:620531/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 4:185024/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 3:873361/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 3:824573/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 3:711896/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 1:574371/140‑1 (MQ=255)
aGCCGTAGAAGGAGGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 8:447609/140‑1 (MQ=255)
ttgAAGGCTGCTCGGGTGATATCGGGTTGCGCGGGAAATTGCGCTGGGCCAGGTGCGTTTTACTGTTGATCCGTGCCGGC‑GGGCGTTTGGCCGCCCGCGCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCtt < 7:691505/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGGTTTGGGCGCCC‑CCCGCATTTTTTTTTTAACAAGGGGTGAACGTCAGCgcaccgt > 1:141359/1‑134 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGAGGTAAATGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGACCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCtt < 4:285533/140‑1 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGGGTGGCCGCCCGCGCGATTTTGTTTTATACCGGGGTGTGAACGTCAGCGAAGcgt > 6:557393/1‑136 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑CGGCGGTTGGCCGCCCGCGCGATTTTGTTTTGTTCCGAGGTCTGAACCTCAGCGaaccat > 6:150419/1‑134 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCTGGAAATGTCGCTGCGCCAGGTGAGTTTTACTGATGATCAGCTCCGTC‑GGGCGTTTGGCCGCCAGCTCTATTTTGTTTTCTACCGTTGTCTGAACGTCAGCGAAGCTTCTg < 6:1033894/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 6:214859/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 7:833916/140‑1 (MQ=255)
ggATGAACGCGTTATATCGATTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTCGTCTGAACTTCAGCGAAGCTTCTg < 6:796710/138‑1 (MQ=255)
tGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTg < 2:126035/140‑1 (MQ=255)
tGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGGTTGGCCGCCCGCGCGCTGTTGTTTTATTCCCGGGTGTGAACGTCAGCGAAGCGTCTGTTCTg > 3:780081/1‑140 (MQ=255)
aaCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGGTTGGCCGGCCGCGCGAGTTTGTTTTGTACCGGGGGGGGCACGAGAGCGTAGCGTCTGttcgg > 5:80512/1‑134 (MQ=255)
cgTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcg < 7:949327/140‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 6:147321/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGGCGCTGCGACAGGTGCGGTTTCCTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGGTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcgcg < 7:499470/140‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGACGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCt < 6:249713/138‑1 (MQ=255)
gCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCtt < 5:64916/138‑1 (MQ=255)
cTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGGTTGGGCGCCCGCGGGAGTTTTTTTTGTTACGTGGGGTGAACGTAAGCGCAGCGTGTGTTCAGGTTTCGCGGGCTTccc > 1:1064206/1‑139 (MQ=255)
tttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGGGGTTGTGCGGCCCCGGGCTATTTTTTTATACAGGGGGTTGTACGTCAGCGAAGCCTCTTGACGGGTGACGCGCGGCTCCgc > 2:118079/1‑139 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTGCTGATGATCAGCGCCGTC‑GGGCGGTTGGGCGCCCGCTCGATTTTGTTTTCTACCGTGGTATGAACGTCAGCGAAGCTTCTTGTCTGGTTTAGCGCGCttacc > 6:757888/1‑135 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGa < 5:454613/76‑1 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGAt < 3:1059847/140‑1 (MQ=255)
tGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGGGGTTGGGCGCCCGCGCGATTTTTTTTTCTACCGTGGTCTGCACGTCAGCGGAGGTTCTGTAGTGGTTTAGCGCGCGTCCGCTc > 7:611340/1‑140 (MQ=255)
gcgcGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATca < 3:379616/140‑1 (MQ=255)
gcgcGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATca < 3:549775/140‑1 (MQ=255)
gcgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATcaca < 1:818189/140‑1 (MQ=255)
gataTGGCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTCAGCGCGCTTCCGATCACAAt < 6:963627/135‑1 (MQ=255)
aTGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 2:798724/140‑1 (MQ=255)
ggcGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 5:557393/136‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTAc < 3:329509/140‑1 (MQ=255)
tGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGtt < 4:388351/140‑1 (MQ=255)
ggcgcCAGGGGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCg < 6:618580/137‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAAtt < 3:713092/140‑1 (MQ=255)
gTTTTACTGATGATCAGCGCCGTC‑GGGCGGTTGGGCGCCCGCGCGGGTTTTTTTTGTACCGTGGTCTTAACGGAAGCGCAGCAGATGTAATGGTTTAGCGCGCTTCCGATCCCAATCAGCGACTAGGTGAGTTTAGTacc > 2:295585/1‑140 (MQ=255)
ttttACTGATGATCAGCGCCGTC‑GGGCGTTTTGCCGCCCGCGCGGATTTGTTTTATACCGTGGGGTGAACGTCAGCGCAGGTTAGTTACATGGTAAGCGCGGTTCCGATCACAAACCCCGACACGGTGAATTAACTcccc > 8:862381/1‑139 (MQ=255)
tttACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTccc < 6:128806/138‑1 (MQ=255)
tttACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCACTTCCGATCACAATCCGCTACTCGTTGAATTCAGTccc < 5:388436/138‑1 (MQ=255)
ttACTGATGATCAGCGCCGTC‑CGGGCTGTGGGCGCCCCCGCCATTTTGTTTTATAACGTTGTTGGTACGTCACCCAACCTACAGTACTTGGTAAGCGCGCTTCCGAGAAACATACGCGAACCGTTGAATTCAGTCCCg > 6:416457/1‑138 (MQ=255)
aCTGCTGATCAGCGCCGTC‑GGGCGGTTGGCCGCCCGCTCGATTATGTTTTCTTCCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCaa < 4:686658/140‑1 (MQ=255)
aCTGATGATCAGCGCCGTC‑GGGCGGTTTGGCGCCCGCGCGGTTTTTTTTTTTTCCGTGGGGTGGACGTCAGCGCAGCGTCGGTTATGGTTAAGCGCGCGTGCGGTAACAAAACGCAACTCGTTTTATTGAGTACCCGc > 6:531466/1‑138 (MQ=255)
atgatCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTTGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 4:417727/140‑1 (MQ=255)
atgatCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGc < 6:297259/138‑1 (MQ=255)
atgatCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCt < 3:920571/140‑1 (MQ=255)
tatCAGCGCCGGC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGa < 8:111204/139‑1 (MQ=255)
aGCGCCGTC‑GGGAGTTTGGCCGCACGCTCGATTTTGTTTTCTACCGTTGTCTGAACGTCAGCGAAGCTTCTGTTCTGGTTACGCTCGCTTCCGATCACAATCCGCTACTCGTTGTATTCAGTCCCGGCAAGCCTGata < 5:1063158/138‑1 (MQ=255)
gcgcCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTTGTCTGAACGTCAGAGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 2:333704/140‑1 (MQ=255)
gcCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 8:1006451/140‑1 (MQ=255)
gcCGTC‑GGGCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 7:114485/140‑1 (MQ=255)
gacGTC‑GGGCGTTTGGCCGCCCTCTCGATTTTGTTTTCTAACGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 6:787133/136‑1 (MQ=255)
cGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAgg < 8:573014/140‑1 (MQ=255)
cGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAgg < 1:635582/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 5:759515/138‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 4:443167/140‑1 (MQ=255)
gCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 3:750939/140‑1 (MQ=255)
gCGGTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 4:1073463/140‑1 (MQ=255)
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CTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTC‑GGGCGTTTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAG > NZ_CP022686/3734230‑3734505
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
