Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F35 I0 R1
|
275 |
15706.7 |
10805118 |
98.3% |
10621430 |
134.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,734,367 |
T→G |
15.4% |
F225V (TTT→GTT) |
yafD → |
endonuclease/exonuclease/phosphatase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,734,367 | 0 | T | G | 15.4%
| 336.7
/ 26.4
| 188 | F225V (TTT→GTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Reads supporting (aligned to +/- strand): ref base T (31/125); new base G (29/3); total (60/128) |
| Fisher's exact test for biased strand distribution p-value = 2.92e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
CTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCA > NZ_CP022686/3734230‑3734504
|
cTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGATATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGCTCAGCGCCGTCGGGGGt‑tt > 7:775547/1‑140 (MQ=255)
caccacAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGg‑tt > 1:128169/1‑138 (MQ=255)
caccacAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTAATGATGATCAGCGCCGTCCGGCGt‑tt > 3:1280941/1‑138 (MQ=255)
accacAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTggg > 7:790262/1‑139 (MQ=255)
cacaGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGgc > 2:378108/1‑138 (MQ=255)
caGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGCACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCCG‑TTGggcg > 4:384693/1‑138 (MQ=255)
caGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTTgccg > 2:917383/1‑138 (MQ=255)
aGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTGggcgc > 2:573789/1‑138 (MQ=255)
ggCCCGGGCATTATGGCGGGAGATTGCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCt < 7:397045/140‑1 (MQ=255)
tcccGGTCATTATGGCGGGAGCTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGACAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTTGccgccccg > 6:1281425/2‑136 (MQ=255)
gCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCTTAGAAGTATGAACGCGTTATATCGCTTAGAGCGTGAAATGTCGCTGCGCAAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGAGT‑TTTgccgcgccg > 4:879354/1‑134 (MQ=255)
gCCCGGTCATTATGGCGGAAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGccgcccgc > 4:374482/1‑138 (MQ=255)
gCCCGGTCATTATGGAGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGTAAATGTCGCTGCGCCAGGTGCGTGTTACTGATGATCAGCGCCGTAGGGCGT‑TTGGccgcccgc > 6:1233528/1‑138 (MQ=255)
ccGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGccgcccgcgc > 5:638837/1‑136 (MQ=255)
ccGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTGGacgccccggg > 6:89921/1‑134 (MQ=255)
gTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGT‑GTGGccgcccgcaccat > 5:453832/1‑133 (MQ=255)
tCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGAtt < 4:750841/138‑1 (MQ=255)
ttATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTg < 4:182166/138‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGACCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGtt < 3:519864/138‑1 (MQ=255)
aTGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGGGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGtt < 3:389514/138‑1 (MQ=255)
ggCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTGGGGCGG‑GTGGGGGCCCGCGCGGTtttttttt > 1:1177525/1‑138 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTa < 5:879087/138‑1 (MQ=255)
gggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTa < 3:697789/138‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTCGAAGGATGAACGAGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGAGCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTAc < 2:978929/138‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGG‑TTGGCCGCCCCCGCGCTTTTTTTTTATAc > 4:1274068/1‑138 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTAc < 4:1233427/138‑1 (MQ=255)
ggAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTAc < 1:556216/138‑1 (MQ=255)
agaTTTCAATTCCTGGAGCCGTAGAAGGATGAACTCGTTATAGCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTg < 8:33940/140‑1 (MQ=255)
gaTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑GTGGGCGCCCGCGCGATTTTGTTTTGTAACGTgg > 8:870666/1‑140 (MQ=255)
ttCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGCGGGG‑TTGGGCGCCCGCACGAATTTGTTTTATACCCTGGTCt > 8:1190736/1‑140 (MQ=255)
tGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCTGGTGCGGTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACg < 7:832106/140‑1 (MQ=255)
ccTGGTGCCGTAGAAGGATGATCGCGTTATATCGCTTTGCGAGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGAGCCGTCGGGCGT‑TTGGCCGCCCGCTCGTTTTTGTTTTCTACCGTGGTCTGAACg < 4:489533/138‑1 (MQ=255)
cgCCGTAGACGGATGAACTCGTTATATCGCTTTGAGCGGGAAATGTCGCTGCGCCAGGTGCGTTATACTGATGATCAGCGCCGTCGGGCGT‑GTGGACGCCCGCTAGATTTTGTTTTCTACCTTGGTCTGAACGTCAGc < 3:742843/137‑1 (MQ=255)
cgCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 3:286110/137‑1 (MQ=255)
cgCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGGGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 6:808577/137‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGGTTTGCGCTGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 1:708910/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGTAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 2:1132238/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTTGGCGCCCGCGCGAGTTTGTTTTATAACGTGGGGTTAACGTCAGc > 3:332322/1‑138 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 6:638837/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 2:1123081/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 1:108344/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 3:455285/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGc < 2:599822/138‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 7:870666/140‑1 (MQ=255)
aGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 7:326199/140‑1 (MQ=255)
gCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCg < 5:1021019/138‑1 (MQ=255)
gCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGaa < 7:561659/140‑1 (MQ=255)
ccGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGa < 1:533362/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTTATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 3:1018156/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 2:259404/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 3:1038214/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 1:1359247/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGc < 4:1293214/138‑1 (MQ=255)
tAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTGGGCGCCCGCGCGGTGTTTTTTTATACCGTGGTCGGAGAGGCAGCGCAACtt > 8:170589/1‑140 (MQ=255)
aGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCTGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCt < 4:552871/138‑1 (MQ=255)
gAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGG‑GTGTCCGCCCGCGCCCTTTTTGTTTATTCCGGGGTATGAACCTCAGCGCAGcat > 5:1238213/1‑136 (MQ=255)
gtaTGAACGCGTTATATCGCTTTGCTCGGGAAATGTAGCTGCGCCAGGTGCGTTTTTCTGATGATCAGCGACGTCGGGCGT‑TTGTCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCTAAGCTTCTGTa < 7:1231023/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCATGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGGCTGAACGTCAGCGAAGCTTCTGTa < 7:916711/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTTGTCTGAACGTCAGCGAAGCTTCTGTa < 8:110126/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 1:663471/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 5:901672/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 3:204407/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTa < 8:1251496/140‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACAGTGGTCTGAACGTCAGCGAAGCTTCTg < 1:93033/138‑1 (MQ=255)
ggATGAACGCGTTATATCGCTTTGAGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTg < 5:23107/138‑1 (MQ=255)
gAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTGGCCGCCCGCTCGAAGTTTTTTTATAACGTGGTCTGAACGGCAGCGAAGCTTCTGTACt > 6:751662/1‑138 (MQ=255)
aCGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGGGTGTTGGCC‑CCCCCGCGATTTTTTTTTTTAGCGGGGTGTGTTAGTCAGCGCAGCTTgtgttatgg > 5:632304/1‑133 (MQ=255)
ttATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcg < 3:90981/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTTCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 1:184064/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 5:697579/138‑1 (MQ=255)
atatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTAcgcg < 4:8284/138‑1 (MQ=255)
tatCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCAGGGCT‑GTGGCCGCCCGCACCCGTTTGTTTTCTTCCGTGGGCTGGACGGCCGCGCAGCCTAAGTACTGGTTAagccc > 6:1110627/1‑136 (MQ=255)
gcGCTTTGCGCGGGAAATGGCGCTGCGCCAGGTGCGTGTTACTGATTATCAGCGCAGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACgcgcgc < 4:41839/137‑1 (MQ=255)
cGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTc < 7:198354/140‑1 (MQ=255)
gCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGGCGCCCGCGCGATTTTTTTTTATACCGGGGTCTGAACGTCAGCGCAGCGTGTGTTCTGGTTTAgcgcgcgt > 6:659508/1‑136 (MQ=255)
cTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGGCGCCCGCGCGATTTTGTTTTATACCGTGGTGTTAACGGCAGCGCAGCGTAGGTAGTGGTTACgcgcgcgtgcc > 8:1053653/1‑135 (MQ=255)
ttGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGTTCAGCGCCGTCGGGCGG‑TTGGCCGCCCGCTCGATTTTGTGTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCg < 4:1191335/138‑1 (MQ=255)
cgGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTGGCCGCCCGCGCGATTTTTTTTTGTTACGTGGTGTGGAAGGCAGCGCAGCTTAGGTAAGGGTTACGGGCGCGTACGCTcac > 6:364984/1‑138 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTTGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 2:1334092/138‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 5:959521/138‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 2:1281618/138‑1 (MQ=255)
gTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAAAGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCt < 4:103193/138‑1 (MQ=255)
cGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGG‑TTGGCCGCCCGCGCGCTTTTTTTTTATAACGTGGTCTGGACGTCAGCGAAGGTTGTGTTCTGGGTTCGCGCGGGTCCGATCACAATCCGCTaa > 4:698126/1‑137 (MQ=255)
tGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCTGGCGT‑TTGGCCGACCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCgat < 7:1158361/140‑3 (MQ=255)
tGCGCCAGGTGAGTTTTACTGATTATCAGCGACGTCGGGCGT‑TTGGCCGCCAGCTCGATTTTGATTTCTACCGTGGTCTGAACGTCAGCGAAGCTGCTGTACTGGGTTCGCGCGCTTCCGATCACAATCCGCTACTCg < 3:805363/138‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGaa < 1:344791/138‑1 (MQ=255)
cAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGaa < 6:187312/138‑1 (MQ=255)
ggTGCGTTTTACTGATGATCAGCGCCGTCGGGGGG‑TTGGCCGCCCGCGCGATTTTGTTTTCTACCGGGGGCTGAACGTCCGCGCAGCGTCTGTACTGGGTACGCGCGCTTCCGCTCACAATCCGCGAATCGTTGAAttaa > 8:428988/1‑138 (MQ=255)
tACTGATGATCAGCGCCTTCGGGCGT‑TGGGCGGCCCGCTCGATTTGGTTTTCTACCGTGGTCTTAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATAACAATCCGCTACTCGTTGAATTCAGTCCCgg < 6:1090027/138‑1 (MQ=255)
ccTGATGATCAGCGCCGGCGGGCGT‑TTGGCCGCCCGCTCGATTGTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGc < 1:323229/137‑1 (MQ=255)
aGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGata < 2:856823/138‑1 (MQ=255)
gcCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCAGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaat < 2:1186587/138‑1 (MQ=255)
gcCGTCGGGCGT‑TTGGCCGCCCGCTAGATTTTGTTTTCTAGCGTGGTCTGAACGTCATCGAAGCTTCTGTACTGGTTACGCGCGCTTCAGATCACAATCCGCTACTCGTTGAATTCAGTACCGGGAAGCCTGattaat < 6:484589/138‑1 (MQ=255)
cGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 2:506596/138‑1 (MQ=255)
cGTCGGGCGG‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa < 3:599818/138‑1 (MQ=255)
gTCGGGCGG‑TTGGCCGCCCGCGCGCTTTTTTTTTATAACGTGGGATGAACGTCAGCGCAGCTTCTGTTCTGGTTTCGCGCGCGGACGCTCCCAAACCGCTACTCGTTGAATTCAGTACCCGCAAGCCAGataaaaaaa > 4:266083/1‑137 (MQ=255)
gCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 3:62000/138‑1 (MQ=255)
gCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATg < 4:134936/138‑1 (MQ=255)
gCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTc < 7:1040149/140‑1 (MQ=255)
t‑ttGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCa < 3:1160110/138‑1 (MQ=255)
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CTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACTGATGATCAGCGCCGTCGGGCGT‑TTGGCCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGCGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCA > NZ_CP022686/3734230‑3734504
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
