Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,110,457 |
T→G |
8.1% |
K12N (AAA→AAC) |
rplM ← |
50S ribosomal protein L13 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,110,457 | 0 | T | G | 8.1%
| 460.8
/ 3.5
| 242 | K12N (AAA→AAC) | rplM | 50S ribosomal protein L13 |
| Reads supporting (aligned to +/- strand): ref base T (83/130); new base G (25/2); total (110/132) |
| Fisher's exact test for biased strand distribution p-value = 7.87e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 247 total aligned reads displayed.
GTTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATA > NZ_CP022686/2110319‑2110594
|
tCAGAACGATGATGTCATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGtttt < 2:913142/140‑1 (MQ=255)
tAATCACCGGTATCTACGTGCGGAGTGTATTCGGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTa < 5:30895/127‑1 (MQ=255)
tcacatgTATCAACGTTCTGAGTGTAATCATCTTTGTGCTTACCGCGCAGGCGACGATCCAGTTCAGTAGCAAGACTTACCAGAGATTTACCAGTCGCGTCAACAACATACAAGTCGAGATTTACGTTTTCAGGTTAAga > 4:840229/7‑139 (MQ=255)
cACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGt > 8:919212/1‑134 (MQ=255)
cGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTCTGGGTTAGCTGtt > 6:52252/1‑139 (MQ=255)
ggTTTCTACGTGAGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTaa < 2:759566/140‑1 (MQ=255)
gTATCTACGTGCGGAGTGTATTCCGATTTGTGCATACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTCGTTTTGCAGTaaa > 2:752908/1‑140 (MQ=255)
tATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTaaaa > 2:605285/1‑140 (MQ=255)
tCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACTGTTTCTGGTTTAGCTGTAAAAGt > 5:962132/1‑140 (MQ=255)
tCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGTTACGGGTTGTGGGTTTGCTGTaaaatt > 2:119700/1‑138 (MQ=255)
cTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGtt < 1:673300/140‑1 (MQ=255)
tACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACTGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGt < 8:372441/138‑1 (MQ=255)
tACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGt > 7:217247/1‑138 (MQ=255)
gTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCa > 2:440839/1‑140 (MQ=255)
gCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGATACGGTTTCTGGTTTAGCTGTAAAAGTTTTCa > 8:774993/1‑138 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTCGGTTTCTGGTTTATCTGTAAAAGTTTTCAttt > 3:991253/1‑139 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCAACAACATACCAGTCGCGGTTTACGGGTTCTGGTTTAGCTGTAAAAGTTTTCAttt > 1:525612/1‑139 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGAGACGAGCCAGTGCAGTAGCCAGCCGGCCCAGAGGTTTACCGGTCGCGGCAACAACCTACCAGTCGCGTTGTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCAt < 7:745335/138‑1 (MQ=255)
cGGAGTGTATTCCGCTATGTGCTTACCGCGAAGGCGACGAGCCAGTACAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCCCGTTTTAAGGGTTTGTGATTAGCTGTAAAAGTTTTCaaaa > 3:880428/1‑137 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTAGCGGTCGCGTCAACACCATACCAGGCGCGTGTTAGGGTTTGTGGGTTTTGTGGTAAATTTTTCAttt > 7:100756/1‑137 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACCAGCCAGTTCAGTAGCCAGACGGCCCAGCGGTTTAGCGGTCGCGTCAACCGCGTACGAGTCGCGTGTAACGGTTTATGTGGTAGCTGTATCAGTGTTCagtt > 7:660888/1‑135 (MQ=255)
aGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAATTTTAATTaaaa > 2:509957/1‑140 (MQ=255)
gtgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGGTTATGGGTTAGCTGTAAAAGTTTTCATTAAAAg > 1:1119226/1‑140 (MQ=255)
tgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGCGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCACCCACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCGGTAAAATTTTGCATTAAAAGc > 6:810371/1‑140 (MQ=255)
gtATTCCGCTTTGTGCTTACCGCGCAGTCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGGCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCt < 4:803939/140‑1 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCtt < 4:398221/140‑1 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGGTTGTGGTTTAGGTGTTAAAGTTTTCATTAAAATCtt > 5:857957/1‑140 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGGTTACGGGTTGTGGTTTTGGTGGAAAAGTTTTCATTAAAAGCtt > 1:847696/1‑140 (MQ=255)
tATTCCGCTATGTGCTTCCCGCGCAGGCGACGCGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACACCATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGc < 7:787794/138‑1 (MQ=255)
ttCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCCACAACATACCAGTCGCGGTTTACGGGTTGTGGGTTTGGTGTTAAAATTTTGATTTAAAggtgtc > 6:55102/1‑135 (MQ=255)
cGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCa < 1:325492/140‑1 (MQ=255)
tttGTGCTTACCGCGCATGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata < 1:189391/140‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGTTTGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata < 2:215930/140‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTTAAAGCTTAACCaata > 3:172758/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 4:542823/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 3:641892/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaa < 8:898973/138‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTCTGGTTTAGCTGTAAAAGTGTTCATTAAAAGCTTACCCaa < 7:375509/138‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTTCGGGTTAAGGTTTAGCGTTTAAAGTTTTGATTTAAAGCATTCCCaata > 3:1088841/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTTGTTTATCTGTTAAAGGTTTCATTAAAAGCTTACCCaata > 8:1048069/1‑138 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTATGGTTTAGCTGTAAAAGTTTTCATTAAAATCTTACCCaataaata > 4:234433/1‑140 (MQ=255)
ttACCGCGCAGGCGACGATCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTAACGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGtt < 2:662880/140‑1 (MQ=255)
ttACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGtt < 4:182141/140‑1 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTa < 3:1037691/140‑1 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTa < 2:269653/140‑1 (MQ=255)
aCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGGCGCGTTTTAACGTTTATGGTTTTACTGTAAAAGGTTTAAATAAAATCTTCACCAATAAATAATTaa > 5:506590/1‑139 (MQ=255)
ccGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATTGTTaca < 3:1141907/140‑1 (MQ=255)
gcgcAGGCTACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACg < 1:71564/140‑1 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACg < 2:32848/140‑1 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACg < 1:893360/140‑1 (MQ=255)
gcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGAGGTTTACGGTTTCTGGTTTAGCGGTAAAAGTTATAAATAAAAGCTGACACAATAAATATTTACACGtt > 6:204033/1‑140 (MQ=255)
aGGCGACGAGACAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTaca > 5:451224/1‑134 (MQ=255)
cgacgaGCCAGTTCAGTACCAAGTCGGACCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCTCTTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGa < 3:613839/140‑1 (MQ=255)
gtcgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTg < 8:716047/136‑1 (MQ=255)
gTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaa < 7:560961/138‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTGTGGTTTTGCTGTTAAAGTTTTAATTTAAAGCTTACCCAATAAAAAGTTACACGTTGGTGAACACCCAAACGGCTTc > 5:1122210/1‑140 (MQ=255)
aGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCa < 3:497094/140‑1 (MQ=255)
gCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCaa < 5:611731/140‑1 (MQ=255)
gCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGATGTTAAATTTTTCATTAAAAGCTTACCCAATAAATAGTTAAACGTTGGTGAACACACAAACGTCtta > 7:903097/1‑137 (MQ=255)
aGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTTCGGGTTCTGGTTTTGCTGTTAAAGTTTTAATTTAAAGCTTTCCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTAAAttt > 6:210863/1‑139 (MQ=255)
gagTTTTACCGGTCGCGTCAACATCATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCTTTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAATCGTCTTCAATTGTTGAGGTTca < 6:190130/140‑1 (MQ=255)
gagTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTTAACACCCAAACGTCTTCAATTGTTGAGGtt < 8:153699/138‑1 (MQ=255)
gagTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGtt < 7:966905/138‑1 (MQ=255)
gagTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTca < 3:339001/140‑1 (MQ=255)
agTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTGTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTcac < 6:441070/140‑1 (MQ=255)
gTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTcaca < 5:692065/140‑1 (MQ=255)
gTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTcaca < 2:230388/140‑1 (MQ=255)
acaggTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGTTTTAGATTTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACa < 6:301529/137‑1 (MQ=255)
ccGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGTTTGTGGTTTAGCTGTAAAAGGTTTACTTTAAATCGTAACCCATAAAAATTTAAACCATGGTGAACAACCAAACGTATTCCATTTTTGAGGTTAACACGAc > 8:59326/1‑138 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGTTTTTCGGTTTGTGTTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAACCAATAAATAGTTTCACGTTGGTGAACACCCAAAAGTCTTCAATTGTTGAGGGTCACACGACAAAGt > 2:1019487/1‑140 (MQ=255)
cgcgTCAACAACATACCAGTCGCGGTTTACGGTTTATGGGTTAGCTGTAAAAATTTTCATTAAAAGCTTAACCAATAAATATTTACACGTTGGTGAAAAACCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTcc > 6:88643/1‑140 (MQ=255)
cgTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCgg < 1:544148/140‑1 (MQ=255)
ggcatctacaTACCAGTGGCGTTTTAAGGTTGCTGGTTTAGCTTTAAAAGTTTTCATTAAAAGCATACCCAATAAATAGTTACACGTTGGTGAAGACCCATACGTCTTCATTTGTTGAGGTTCACTCGACATAGTCCGGc < 5:28630/133‑1 (MQ=255)
caTACCAGTCGCGTTTTACGGTTTCTGTTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGATACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAc < 3:515653/140‑1 (MQ=255)
tACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTTAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACCCGACAAAGTCCGGCAAACCTAccc > 6:337259/1‑140 (MQ=255)
tACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAccc > 4:1102205/1‑140 (MQ=255)
aCCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcccc < 2:86404/140‑1 (MQ=255)
aCCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcccc < 3:534331/140‑1 (MQ=255)
aCCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcccc < 4:601308/140‑1 (MQ=255)
aCCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcccc < 4:641892/140‑1 (MQ=255)
aCCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcc < 7:128702/138‑1 (MQ=255)
aCCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTATTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGGCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcccc < 6:1071543/140‑1 (MQ=255)
ccAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCt < 5:52252/140‑1 (MQ=255)
ccAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGGCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCt < 1:1008633/140‑1 (MQ=255)
caatgcgccTTTTCCGGCTTCTGTATTAGCTGTAAAAGTTTTAATTCAACGCTTACCCAATAAATAGTTACACGATCGTGAACAACCAAACGTCTTCAATAGTTGAGGGTCACACGACAAAGTCCGGCAAACCTACCCCt < 6:1027398/135‑1 (MQ=255)
gTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACAAGTTGGTGTACACCCAAACGTATTAAATTGTTGAGGTTCACCCGACAAAGTCCGGCAAACCGACCCCTTCg > 6:529572/1‑140 (MQ=255)
tCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTGCGa > 4:708777/1‑140 (MQ=255)
tCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACACGTTTGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCATCGa > 1:391485/1‑140 (MQ=255)
tCGCGGTTTACGGTTTCTGGGTTAGCTGTAAAAGTTTTCATTAAAATCTTAACCAATAAATAGTTACACGTTGGTGAGCACCAAAAAGTCTTCAATTGTTTAGGGTCACACGACAAAGTCATGCAATCCTACCCCTTCGa > 6:466133/1‑140 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 5:210863/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 4:1042746/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 3:980688/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 3:83615/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 2:377604/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGGCTTCAATTGTTGAGGTGCACACGACAAAGTCCGGCAAACCTCCCCCTTCg < 8:437379/138‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGATGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 3:395771/140‑1 (MQ=255)
cgcgTTGTACGGTTTCTGGTTTAGCTTTATAAGTTTTCATTAAAAGCTTACCAAATAAATAGTTACACGTTTGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 4:999113/140‑1 (MQ=255)
cgagTTTTTCGGTTTCTGGTTTAGCTGTAAAAAATTTCATTAAAATCTTACACAATAAATAGATACACGTTTGTGAACCCCCAAAAGGCTTGAATTGTTGAGGTTAACAAGAAAAAATACGGCAAACCAACAACTTcc > 8:625287/4‑137 (MQ=255)
gcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACCCCCAAACGTCTTCAATTGTTGAGGTTCACCCGACAAAGTACGGCAAACCTACCCCATCGa > 8:16915/1‑138 (MQ=255)
gcgGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGa > 7:907638/1‑138 (MQ=255)
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GTTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATA > NZ_CP022686/2110319‑2110594
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
