Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,110,457 |
T→G |
8.6% |
K12N (AAA→AAC) |
rplM ← |
50S ribosomal protein L13 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,110,457 | 0 | T | G | 8.6%
| 477.2
/ 4.0
| 246 | K12N (AAA→AAC) | rplM | 50S ribosomal protein L13 |
| Reads supporting (aligned to +/- strand): ref base T (79/136); new base G (26/3); total (107/139) |
| Fisher's exact test for biased strand distribution p-value = 6.08e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 251 total aligned reads displayed.
TTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATAGC > NZ_CP022686/2110320‑2110596
|
cAGAACGATTATGTAATCACCGGTATCTACGTGCGGAGTTTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTa < 7:575425/140‑1 (MQ=255)
cAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTa < 6:312674/140‑1 (MQ=255)
atgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGtt < 4:1122224/138‑1 (MQ=255)
tgatgTAATCACCGGTAACTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTAACGGTATca > 6:624740/1‑139 (MQ=255)
atgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGTTTCGGTTTCTgt > 8:259648/1‑139 (MQ=255)
tAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTGCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGttt < 5:618458/140‑1 (MQ=255)
aTCACCGGTATCTTCGTGCGGAGTGTATTCCTCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGGCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAg < 5:10544/140‑1 (MQ=255)
aCCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGc > 3:39323/1‑138 (MQ=255)
cGGTATCTACGTGAGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTATGTTTCGGGTTTTGCTGTa > 8:379373/1‑140 (MQ=255)
cttcGTGCTGAGTGGATTCCTCTTTGTGCTTCCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTATGGTTTAGCTGTAAAAg < 3:980476/135‑1 (MQ=255)
tACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGt < 3:1020419/138‑1 (MQ=255)
gTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGGTTCTGGGTTAGCTGTTAAAGttttaa > 1:1163544/1‑138 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCAt < 4:934214/138‑1 (MQ=255)
cGGAGTGTATTCCGCGTTGTGCTTACCGCGCAGGCGCCGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCAt < 4:1111183/138‑1 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTGTTCGGTTTCTGGGTTTGGTGTTAAAGTTTTGAATaaa > 1:396843/1‑140 (MQ=255)
gtgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGTTTCGGTTTCTGGGTTAGCTGTTAAAGTTTTAATTAAAAg > 6:1079769/1‑140 (MQ=255)
tgtATTCCGGTTTGTGCTTACCGGTCATGCGACTTTCCAGTTCAGTAGCCAGTAGGCCCAGAGTTTTACCGGTCGCGTCAACAACATTACAGTCGCGTTTTACGGTTTCTGGTTTATCTGTAAAAGTTTTCATTAATAGc < 5:471644/140‑1 (MQ=255)
tgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTTGGTGTATAAGTTTTCATTaaaa > 4:980472/1‑138 (MQ=255)
gtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTATGGTTTTGCTGTAAAAGTTTTAATTAAAAg > 4:128609/1‑138 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGc < 4:214693/138‑1 (MQ=255)
tATTCCGCTTTGAGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGc < 3:523237/138‑1 (MQ=255)
gCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTATTACGGTTTCTGGTTTATCTGTAAAAGTTTTCATTAAAAGCTTACCCaa > 6:100099/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCTCGGTTTAAGGTGTATGGGTTAGCTGGAAAAGTTTTCATTAAAAGCTTAACCaata > 7:75426/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTCGGTTTGTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 8:946394/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTa > 8:1053778/1‑112 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTa < 7:1053778/112‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata < 5:446125/140‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACAGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTTAAAGTTTTAGTTAAAAGCTTACACaata > 1:693035/1‑140 (MQ=255)
tttGTGCATACCGCGCAGGCGACGAGCCAGTTCATTAGCCAGACCGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata < 5:230820/140‑1 (MQ=255)
ttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataa < 1:950768/140‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTCGGTTTCTGGTTTTGGTGTAAAAATTTTGATTTAAAGCTTACCCaataaa > 5:762947/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaa < 2:814944/140‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTGCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaa < 8:703797/140‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGGTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCACCAACATACCAGTCGCGTTTTTCCGGTTCTGGGTTTGCTTTTAATGTTTTCATTTAAAGATTACACaataaa > 6:512112/1‑140 (MQ=255)
gCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaat < 4:849761/138‑1 (MQ=255)
cTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTAAGATGTATGGTTTAGCTGTAAAAATTTTCAATAAAAGCGTACCCaataaata > 3:1077311/1‑138 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGt < 4:817533/138‑1 (MQ=255)
aCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTac > 2:613777/1‑140 (MQ=255)
aCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAAAAACATACCAGTCGCGGTTTTAGGTTTGTGGTTTAGCAGTAAAAGTTTTCATTAAAAGCGTACCCAATAAAAAGTTac > 6:239403/1‑140 (MQ=255)
ccGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACATCATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTaca < 8:619389/140‑1 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTCGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACg < 6:601807/140‑1 (MQ=255)
gctacgaGCCAGTTCAGTAGCCAGACGGCCCAGTGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTg < 5:778314/137‑1 (MQ=255)
cgacgaGCTAGCTCAGTAGACAGACGGACCAGAGATTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTGTAGCTGTAAAAGTTTTCATTATAAGCTTACACAATAAATAGTTACACGTTGGtta < 1:293918/140‑3 (MQ=255)
gacgaGCCATTTCAGTAGCCAGACGGCCCACAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACACAATAAATAGTTACACGTTGGTGaa < 7:379373/140‑1 (MQ=255)
gacgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGaa < 5:541195/140‑1 (MQ=255)
gacgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGaa < 2:1135855/140‑1 (MQ=255)
aGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACAcc < 7:971741/140‑1 (MQ=255)
cAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaa < 7:1009589/140‑1 (MQ=255)
cAGGTCAGTAGCCAGACGGCCCAGAGGTTTACCGGGCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaa < 6:897714/140‑1 (MQ=255)
aGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTAGGGTTATGGTTTAGCTTTAAAAGTTTTTATTAAAAGCTTAACCAATAAATATTTAAACCTTGGTGTACACCCaaa > 5:334700/1‑140 (MQ=255)
aGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTATGGGTTAGCTGTAAAAGTTTTAATTAAAAGCTTAACCAATAAATAGTTACACGTTTGTGAACACCCaaa > 6:1068321/1‑140 (MQ=255)
gTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAAc < 2:270578/140‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc < 2:483121/140‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCACCAACATACCAGTCGCGGTTGACGGGTTAGGGTTTAGCGGTAAAAGTGTTCATTAAACGCGTACCCAATACATAGGTACACGGTGCGGAACCCCCCCACGGCTTc > 8:441870/1‑140 (MQ=255)
gCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCCGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc < 4:1056297/138‑1 (MQ=255)
cccAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGGTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGGGAACACCCAAACGTCTTCaa < 6:1031194/139‑1 (MQ=255)
aGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGGAAAAGGTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTTGTTCACACCCAAACGGCTTCAAttg > 7:828847/1‑140 (MQ=255)
aGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTAAGGGTTGTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCATACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTATTCAAttt > 2:410247/1‑139 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAAttgtt < 1:1039977/140‑1 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCAATAAAAGCTTACCCAAAAAAAAGTTAAACGGTGGTGAACCCCCACACGTCGTCAAttgtt > 6:818103/1‑140 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGGTTAAGGTGTATTGTTTATCTGTTAAATTTTTAATTAAAAGCATACCCAATAAAAAGTTTCACCTTTTTTAACCCCCAAACGTCATAAAttttt > 1:1115439/1‑140 (MQ=255)
ttagTTTAACCGGTCGCGTCAACAACATACCCGGCGCGTTTTAGGGTTTCGGGTTTAGCTGTAAAAGTTTTCATAAAACGCTTACCCAATAATTTGTTCCACGTGGTTGAAC‑CCCCAACGTCTTCAATTGTTGAGGTTca < 8:184768/138‑1 (MQ=255)
gagTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTca < 1:549082/140‑1 (MQ=255)
ttACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCacac < 4:770736/138‑1 (MQ=255)
tACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTATGGTTTAGGTGTAAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTTAGGTTCACACGAc > 7:114423/1‑140 (MQ=255)
tACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGTTTGGTGGTTAGCTGTAAAATTTTTAATTAAAAGCTTACCCAATAAAAAATTACACCTTTGTGAACACCCAAACGGGGTCAAATTTTGAGGTTCACACGAc > 1:878299/1‑140 (MQ=255)
aCCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACa < 7:901632/140‑1 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTGTGGTTTAGCGGTTAAAGTTTTCATTAAAAGCGTACCCCATAAATAGTTACACGTTGGTGTACACCCAAACGTCTTCAATTGTTGTGGTGAACCCGACAAAGt > 2:364352/1‑140 (MQ=255)
cgcgTCAACAACATACCAGTCGCGTTTTAAGGGTTATGGGTTAGAAGTAAAAATTTTAATTAAAAACTTAACCAATAAAAATTTAAACATTGGTGAACACCCCAACGAATTCAAATGTTGAGGGTCACACGACCAAGt > 3:266943/1‑138 (MQ=255)
cgTCAACAACATACCAGTCGCGTTTTACTGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTcc < 3:880906/138‑1 (MQ=255)
cgTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTcc < 4:1077735/138‑1 (MQ=255)
cgTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTcc < 3:741402/138‑1 (MQ=255)
gtaaacaacATACCTCTCGCGTTTTACGGTTTCTGTTTAATCTTTAAAATTTTTCATTAAAATATTACCCAATACATAGTTACACTTTGGTGAACACACAAACGTCTTCAATTGTTGTGGTTCACACGACAAAGTCCGGc < 8:291462/137‑1 (MQ=255)
gTCATCAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGc < 7:995375/140‑1 (MQ=255)
acctACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGATACGCGTTGGTGACCACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTa < 7:617030/137‑1 (MQ=255)
acaTTCAAGTCGCGTTTTACGGGTTCTGGTTTAGCTGTAACATTTTTTATTATAGGGTTACCCAATAAATAGTTAGACGTTGGTGAACACACTAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCTGCAAAcc < 4:713160/138‑1 (MQ=255)
acaTACCAGTCGCGTTTTACGGTTTCTGGGTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTa < 7:882534/140‑1 (MQ=255)
aTACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTa < 3:46970/138‑1 (MQ=255)
tACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAc < 3:62312/138‑1 (MQ=255)
tACCAGTCGCGATTTACGTTATCTTGATTAGCAGTAAAAGTTTTCATTAAAAGCATACCCAATAAAAAGTTACACTTTGCTTAACACCAAAACTTATTCCATAGTTCGGGTTCACACCACAAAGTCCGCCAAACCTAacc > 6:964209/1‑140 (MQ=255)
tACCAGACGCGTTTTACGGTTTCTGTTTAAGCTGTAAAAGTTTTCATTAAAAGCGTACCCAATAAATAATTACACGTAGCTGCACACCCAAACCTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAccc > 2:925057/1‑140 (MQ=255)
gTCGCGTTTTACTGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAAAACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg > 6:875596/1‑140 (MQ=255)
gTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg > 2:258787/1‑140 (MQ=255)
tCGCGTTTTACGGTTTCTGGTTTAGGTGTAAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACCCCCAAACGTCTTCAATTGTTGAGGTTCAAACGACAAAGTACGGCAAACCTACCCCTTAGa > 7:146116/1‑140 (MQ=255)
tCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTc < 4:515021/138‑1 (MQ=255)
tCGCGTGTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAAGCGTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAAGTGTTGAGGGTAACACGACAAAGTCCGGCAAACCTACCCCTTCgc > 6:560621/1‑139 (MQ=255)
cgcgTTTTAGGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACAGGTTGGTTAACAACCAAAAGTCTTGAATTGTTGATGTTCACACGACAAAGTCAGGCAAACCTACCCCTTCGaa < 5:260508/140‑1 (MQ=255)
cgcgTTTTACGTGTTCTGGTTTAGCTGTAAAAGTGTTCATTAAAAGCTTACCCAATAATTAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 5:43853/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTATATGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 2:878831/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACTTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAATTCCGGCAAACCTACCCCTTCg > 4:457612/1‑138 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 3:190257/138‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 1:522605/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 7:455011/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 1:251901/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 7:22938/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 2:914029/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 6:762947/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 1:821781/140‑1 (MQ=255)
gcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTAAATTTTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGa > 3:448294/1‑138 (MQ=255)
ttttACGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAATCTTACCCAATAAATAGTTAAACGTTGGTGAACACCCCAACGTCTTCAATTGTTGATGTTCCCACGACAAAGTCCGGCAAACCTACCCCTTCGAATAGc > 2:109375/1‑140 (MQ=255)
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TTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATAGC > NZ_CP022686/2110320‑2110596
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
