Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,110,457 |
T→G |
13.3% |
K12N (AAA→AAC) |
rplM ← |
50S ribosomal protein L13 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,110,457 | 0 | T | G | 13.3%
| 394.1
/ 15.5
| 231 | K12N (AAA→AAC) | rplM | 50S ribosomal protein L13 |
| Reads supporting (aligned to +/- strand): ref base T (81/112); new base G (32/4); total (115/116) |
| Fisher's exact test for biased strand distribution p-value = 1.05e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 239 total aligned reads displayed.
CGTTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATA > NZ_CP022686/2110318‑2110594
|
ttCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGCCGAGCCAGTTCAGTAGCCAGCCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑Ggtt > 7:552145/1‑140 (MQ=255)
ttCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑Ggtt > 8:1130020/1‑140 (MQ=255)
cAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑Gttt > 2:1001176/1‑138 (MQ=255)
cAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTa < 4:43162/140‑1 (MQ=255)
cAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTa < 8:246531/140‑1 (MQ=255)
taaCGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACg < 3:471560/139‑1 (MQ=255)
gAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACg < 3:379893/140‑1 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTTCGGTTTCt > 7:149801/1‑140 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACGGtttat > 6:538916/1‑138 (MQ=255)
atgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCt > 2:1089271/1‑138 (MQ=255)
atgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACggggtat > 1:431349/1‑133 (MQ=255)
tAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGttt < 3:191955/140‑1 (MQ=255)
tAATCACCGGTAGCTACGTGCGTAGTGTATTCCGCGTTGTGCTTACAGCGCAGGCTACGAGCCTGTTGAGTAGCCAGACGGACAAGTGTTTTACCGGTCGCGTCAACAACATACCAGTCTC‑GTTTTACGGTTTCTGGttt < 8:203444/140‑1 (MQ=255)
aCCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTg > 8:760047/1‑140 (MQ=255)
cGGTATCTACGTGCGGAGTGTATTCCTCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCACCAACATCCCAAGCCC‑GGTTTACGGTTTATGGTTTAGCTGTa > 7:67491/1‑140 (MQ=255)
gTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTaaa > 8:379831/1‑140 (MQ=255)
gTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTa > 2:121549/1‑138 (MQ=255)
tATCTACGTGCGGAGTGTATTCCGCTTTGAGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATCCCAGTCGC‑GATTTACCGTTTGTGGTTGAGCTGTaa > 2:753062/1‑138 (MQ=255)
tACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGttt < 6:874829/140‑1 (MQ=255)
tACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGt > 1:1074386/1‑138 (MQ=255)
aCGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGCCGCGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTCCCGGTCGCGTCAACCACATACCAGTCGC‑GTTGTACGGTTTCGGGTGTAGCTGTAAAAGtttt > 8:932425/1‑140 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGCCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGGTTCTGGGTTTTCTGTAAAAGTTTTCATTa > 5:444599/1‑140 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCACCACCATACCAGTCGC‑GGGTTACGGGTTCTGGGTTATCTGTAAAAGTTTTCAttt > 3:648940/1‑139 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTa < 5:28892/140‑1 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTGTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTa < 7:824095/140‑1 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGAGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCAAGAGTTTTACCGGTCGCGTAAAAAACATACCAGTCGC‑GTTGTACGGTTTATGCGTTAGCTGTTAATGTTTTCAttt > 6:586748/1‑139 (MQ=255)
aggAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGGTTCGGGTTTAGCTGTAAAATTTTTCATTa > 5:88027/2‑140 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGATCCAGTTCAGTAGCCAGACGTCCCAGAGATTTACCGGTCGCGTCAACAACATACCAGTAGC‑GATTTACCGGTTCTGGTTTTGCGGTTAAAGTTTTAAtgt > 1:1158042/1‑136 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTa > 2:856097/1‑138 (MQ=255)
gtgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGCGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTGTGGTTTAGCTGTAAAAGTTTTCATTAAAAg > 8:979391/1‑140 (MQ=255)
gtgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTaaaaa > 3:925613/1‑139 (MQ=255)
gtgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTAAGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAg > 8:1035927/1‑140 (MQ=255)
tgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGGCGC‑GGTTTACGGTTTCTGGGTTAGCGGGAAAAGTTTTAATTTAAAGc > 6:976015/1‑140 (MQ=255)
gtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAg > 2:196102/1‑138 (MQ=255)
gtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTAAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCt < 5:10981/140‑1 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGc < 1:147156/138‑1 (MQ=255)
ttgcGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTGAGTAGCGAGACGGCCCAGAGTTTTTCCGGTCGCGTCAACATCATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc < 7:778867/137‑1 (MQ=255)
tCCGCTTTGTTCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc < 5:315778/140‑1 (MQ=255)
tCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc < 3:1137938/140‑1 (MQ=255)
gCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTAAGGTTTATGGTTTAGCTGTAAAAGTTTTCATTAAAATCTTAACCaa > 5:994074/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaa < 2:473548/138‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTAAGGTTTCTGGGTTATCTGTTAAATTTTTAATTAAAAGCATACCCaata > 5:933934/1‑140 (MQ=255)
tttGTGATTACCGCGCAGGCGACGAGCCTGTTAAGTAGACAGACGGCCCAGAGTTTTACCGGTAGCGTCAACAACTTAACAGTCGC‑GTTTTACGGTTGATGGTTTAGATGTAATAGTTTTGATTTCAAGCTTACACaatt > 8:722501/1‑139 (MQ=255)
tttGAGCTTACCGCGCAGGCGACGAGCCAGTTGAGTAGCCAGACTGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑CTTTTACGGTTTCTGGTTTAGCAGTAATAGTTTTCATTAAAAGCTTACCCaata < 6:188148/140‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc < 3:1163225/133‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc > 4:1163225/1‑133 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTATGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaaaa > 2:518916/1‑136 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTTCGGGTTCTGGGTTAGCTTGAAAAGTTTTCATTAAAAGCTTTCCCaata > 1:317649/1‑138 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTTAGGTTTGTGTTTTTGCTGTAAAATTTTTAATTAAAATATTACCAaataaa > 5:599013/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACGGTTTGGGGTTTTGCTGTAAAAGTTTTCATTAAAATCTTACCCaata > 1:212368/1‑138 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGGTTACTGTTTATGGTTTTGCTGTTAAAGTTTTTATTTAAACAATACCCaaaaaa > 5:1118081/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCAACAACAAACCAGTAGC‑GTTTTAACGTTTATGGTTTATCAGTAAAAATTTTAATTAAAATCATACCCaataaa > 3:578460/1‑140 (MQ=255)
tgCTTACCGCGCAGGCGCCGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCCACAACATACCAGTCGC‑GGTGTACTGGGTGTGGTTTTGCTGGTTAAGTTTTTCTTAGAAAGTTTCCCaataaa > 1:598216/1‑138 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTTAGGGTTT‑TGGTTTAGCTGTTAAATTTTTGATTAAAAACTTACCCaataaa > 1:1109162/1‑138 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaata > 4:986113/1‑140 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACGGTTTATTGTTTATCTGTTAAAGTTTTGAATAAAAGCTTACCCaataaata > 5:733693/1‑140 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGt < 2:965044/138‑1 (MQ=255)
aCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTac > 8:622678/1‑140 (MQ=255)
aCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACGGGTTGTGGTTTAGCTGTAAAAGTTTTAATTAAAAGCGTACCCAATAAATAGttta > 3:611764/1‑138 (MQ=255)
cgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTc > 8:109089/1‑86 (MQ=255)
aGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAAAAACAAACCAGTCGC‑GTGTTACGGGTTAAGGTTTAACGGGAAAACTTTTAATTAAAATATTAACAAATAAAAATGTACCCGTTGGTGCGCACACaaa > 6:327759/1‑140 (MQ=255)
cAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTGGGTGAACACCCAAACGTc < 4:584456/140‑1 (MQ=255)
aaGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACTACATAACAGTCGC‑GTTTTACGGTTTCTGTTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTc < 8:904482/139‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc < 5:498446/140‑1 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAAttgtt < 7:379831/140‑1 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAAttg < 2:228375/138‑1 (MQ=255)
gagTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTca < 6:445736/140‑1 (MQ=255)
cccGGTCGCGTCAACAACATTCCAGTCGC‑GTTTTACGGTTTCTTGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCTATAAATAGTTACACGTTGGTTAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACa < 4:834460/139‑1 (MQ=255)
aCCGGGCGCGTCAACAACATACCAGTCGC‑GGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGa < 2:595010/138‑1 (MQ=255)
cGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACaaa < 3:751394/140‑1 (MQ=255)
gTCGCGTCAACAACATACCAGTCGC‑GGTTTAAGGTTTCTGGTTTTGCTGTTAAATTTTTAATTAAAAGCATACCCAATAAATAGTTAAACGTTGGTGAACACCCAAACGTCTTAAATTTTTTAGGTTAACACGACaaatt > 5:493891/1‑138 (MQ=255)
cgcgTCAACAACATACCAGTCGC‑GGTTTAAGGTTTATGGTTTATCTGTAAAAATTTTAAATAAAATCTTAACCAAAAAAAATTTAAACCTTGGTGAACACCCAAACCACATCAAATGTTTAGTTTAACACGACAAAGTcc > 3:268387/1‑140 (MQ=255)
cgTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGTTTTAGCTGTAAAAGATTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCgg < 8:414163/140‑1 (MQ=255)
cgTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCgg < 7:107390/140‑1 (MQ=255)
cgTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGGGAACACCCAAACGTCTTCAATTGTTGAGGTGCACACGACAAAGTcc < 2:652030/138‑1 (MQ=255)
gTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGc < 4:955508/140‑1 (MQ=255)
gTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGc < 6:733693/140‑1 (MQ=255)
gTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGc < 4:1024457/140‑1 (MQ=255)
acaTACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTa < 4:293756/140‑1 (MQ=255)
tACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCAAccc > 6:666808/1‑140 (MQ=255)
tACCAGTCGC‑GGTTTACGGTTTCTGGTTTATCTGTAAAATTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTTGTGAACACCCAAACGTCTTCAATTTTTGAGGTTCACACGAAAAAGTCCGGCAAACATAc > 1:732350/1‑138 (MQ=255)
aactgTCGC‑GTTTTACGGTTTCTGGTTTAGCTTGAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACACAAACGTCTTCTATTGTTGAGGTTCAGACGACAAAGTCCGGCAAACCTAcccc < 4:681526/136‑1 (MQ=255)
aCCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCTATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcc < 1:121549/138‑1 (MQ=255)
aCCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcccc < 8:504301/140‑1 (MQ=255)
ccAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCt < 3:847415/140‑1 (MQ=255)
ccAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCt < 3:1033118/140‑1 (MQ=255)
gTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACCCCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg > 4:911454/1‑140 (MQ=255)
ctc‑gTTTTACTGTTTCTGGATTAGCTGTAAAAGTTTTCATTAAAAGCTTAACCAATAAATATTTAAACGTTGGTTAACACCCAAACGTCTTCAATTGTTTAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 6:599013/138‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATCGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 5:660755/140‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 1:624209/138‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 6:779863/140‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 4:622460/140‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 7:1130020/140‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGGTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 4:528644/140‑1 (MQ=255)
cgc‑gTGTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAACGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 1:83267/138‑1 (MQ=255)
cgc‑gGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTTAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 3:535366/140‑1 (MQ=255)
gc‑gTTTTACGGTTTCTGGGTTATCTGTAAAAGTTTTAATTTAAATCTTACACAATAAATAGTTACACGTTGGTGAACACCCAAACGTCGTCAATTGTTGAGGTTAACACGACAAAGTACGGCAAACCAACCCCATCGAAt > 7:651664/1‑140 (MQ=255)
gc‑gTTTTACGGTTTATGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTAAACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAATGCAGGCAAACCTAACCCTTCGAAt > 6:428931/1‑140 (MQ=255)
gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACCTTGGTGAACACCCAAAAGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCATAGAAt > 2:340365/1‑138 (MQ=255)
ttttACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATa < 1:940406/138‑1 (MQ=255)
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CGTTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATA > NZ_CP022686/2110318‑2110594
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
