Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,289 |
A→C |
13.7% |
N156T (AAC→ACC) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,289 | 0 | A | C | 13.7%
| 194.5
/ 4.0
| 110 | N156T (AAC→ACC) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (60/32); new base C (4/14); total (64/46) |
| Fisher's exact test for biased strand distribution p-value = 1.22e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 113 total aligned reads displayed.
ATGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925150‑3925428
|
aTGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACaa > 3:574140/1‑140 (MQ=255)
cgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAAc < 7:307787/138‑1 (MQ=255)
cgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGGTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAAc > 7:16271/1‑138 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCCCAACGGCg > 2:277511/1‑140 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGaa < 5:446545/140‑1 (MQ=255)
ccGGCGTTTCCGCGCGCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGaa < 3:164604/140‑1 (MQ=255)
cGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGaat > 1:682119/1‑139 (MQ=255)
cGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAAc < 4:497218/140‑1 (MQ=255)
tttCCGCGCTCGTCTGCACGCTGCCAGAAAAAGAGGGGCACAACGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATc < 5:910402/140‑1 (MQ=255)
tCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACGGTTTCTGGTGCGCGGGATATTGCCGACGTCCTGGTGGCGTCACGGAGGTCGTTTGTTGTCT‑ACTGGTATGACTACCGCCGCAACGGCGCACGCTTccg > 5:830526/1‑139 (MQ=255)
ccGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGAAAAACTGCTGGCGTCCGTTAGTTCGCTTCTTCTAT‑ACTGGTATCACTACAGCCACACCGGCGAACGCATCCAg > 6:798386/1‑140 (MQ=255)
gCTGCACGCTGCCAGAAAAAGAGGGGCACACTGTTTCTGGTGCGCGGGATATTGCCTACAAACTGCTGGCGTCACTTAGTTCTATTCTTCTCT‑ACTGTTATCACTACAGCCACAACGGCTAACGCATCCAGCCGGAAACt < 2:10863/140‑1 (MQ=255)
aCGCTGCCATAAAAAGAGGGGCACACCGTTTCTGGTGCGGGGTATATTGCCGAAAAACTGCTGGCGTCACTTAGTTCTATTCTTCTCT‑ACTGGTATCACTACACCCACACCGGCGAACGCATCCAGCCTGAAACtgatga < 2:334033/140‑1 (MQ=255)
cgcgGCCAGAACACGTGGGCCACACCGTGGCTGGTGCGGGGGATATTGCCGACAAACTCCGGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACtgatg < 8:674857/138‑1 (MQ=255)
cGCTGCCAGAAAACGAGGGGAACACTGTTTCTGGTGCGCGGTATATTGCCGACAAACTGCTGGCGTCAATTAGTTCGTTTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCTAACGCATCCAGCGGTAAACTTATgac < 4:536151/140‑1 (MQ=255)
cTGCCATAAAACGCGGGGCCCACCGTTTCTGGGGCGCGTGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCTATTGTTCTCT‑ACTGGTATAACAACCGCCACAACGGCGAACGCATCCACCCGTAAACTGATgacga < 6:729827/140‑1 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 2:483182/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 1:520068/1‑140 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 7:565470/1‑138 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGActc > 2:243846/1‑140 (MQ=255)
ccAGAAAAAGAGGGGCACACAGTTTCTGGTGCGCGGGATATTGCCGACACACTGCTGGCGTCACTTAGTTCGATTGGTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACGGATGACGActc > 4:441159/1‑140 (MQ=255)
aaaGTGGGCCACACGGTTTGTGGGGCGCGGTATATTCCCGACAAACTGGTGGCGTCATTTAGTTCGATTATTCTCT‑ACTGGTATCAATACCGCCACAACGGCGACCGCATCCAGCCGGAAACTGATGACGACTCTATcgg < 6:730171/140‑1 (MQ=255)
agcggggCACCCCGTTTGTGGTGCGCGGGATATTCCCGACAAACTCCTGGCGTCACTTTGTTCTATTCTTCTCT‑ACTGTTATCACTACAGCCCCAACGGCGAACGCATCCAGCCGGAACCTCATGACGACTCTATcggcg < 4:681577/137‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGACGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCTAACGCATCCAGCCGGAAACGGATGACGACTCTATcggcg > 8:646046/1‑138 (MQ=255)
gggCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCCCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATcggcgggcc > 1:43331/1‑137 (MQ=255)
cccGTTTGTGGGGCGCGGTATATGCCCCACAAACTGCTGGCTCCAATTAGTCCGATTCTTCTCA‑ACTGGTATCACAACCCCCACAACGGCAAACGCACCCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCt < 3:647004/139‑1 (MQ=255)
acCTTTTCTGGTGCGCGGGATATTGCCTACAAACTGCTGGCGTCACTTAGTTCTTTTCTTCTCT‑ACTGTTATCAATACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCt < 2:743509/140‑1 (MQ=255)
gcggGGGATATTGCCGACAACCTGCTGGCGGCACTTAGTACGATTCTTCTCT‑ACTGGTATCAATACAGCCCCACCGGCTACCCCATCCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 4:3110/140‑1 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTTTCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGCTGACGACTCTATAGGCGGTCACATCCTGCCTCTGCTGCa > 1:419714/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCATCTCT‑ACTGGTATCACTACAGCCACAACGGCGaa > 2:474307/1‑81 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCATCTCT‑ACTGGTATCACTACAGCCACAACGGCGaa < 1:474307/81‑1 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTGTTCTCT‑ACTGGTATCACTACAGCCACACCGGCGAACGCATACAGACGGAAACTGATGACGAATCTATCGGCGTTCACTTCCTGCATCTGCTGAACgg > 6:545767/1‑140 (MQ=255)
atatTGCCGACAAACTCCTGCCGTCACTTAGTACTATTCTTCTCT‑ACTGGTAACCCCACAGCCACAACGGCGAACGCATCCAGCCGCAACCTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGaa < 5:523177/140‑1 (MQ=255)
ccGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCg > 6:105461/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 4:300136/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 1:22423/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 6:104357/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 3:770548/1‑140 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCTAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:80949/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:22289/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:802984/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa < 4:574140/140‑1 (MQ=255)
aaaCTGCTGGCGTAACTTTGTTCTATTCTTCTCA‑ACTGGTATCACACCAGCCACACCGGCTACCGCATCCACCCGCAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg < 7:427229/138‑1 (MQ=255)
aaaCTGCGGGCGTAACTTATTTCTATTCTTCTCA‑CCTGGTATCACTACACCCACAACGGCGACCGCACCCCGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg < 7:382409/138‑1 (MQ=255)
ctgagggCGTAAATTAGTTCGATTCTTCTCT‑ACTGGTATCACTACCCCCCCACCGGCTACCGCAGCCAGCCGTAAACGGATGACGACTCTCTCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 3:526110/135‑1 (MQ=255)
cggcgggCGTCACTACGTTCGATTCTTATCT‑AGTGGTATCACACCACCCACACCGGCGACCGCATCCCCCTGGAAAATGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaa < 8:557338/133‑1 (MQ=255)
cgacACTTAGTTCTATTCTACTCT‑ACTGTTATCCCAAAAGCCCCACCGGCTAAAGCAGCCACCCGTAAACTCATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaa < 4:913065/137‑1 (MQ=255)
cGTCACTTAGTTCGATTCTTCTCT‑ACTGGGATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTggg > 8:672388/1‑138 (MQ=255)
tCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCCCTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa > 1:854001/1‑140 (MQ=255)
aCTTCGTTCTTTTTTCCTCT‑ACTGGTAACACAACAGCCACAAGGGCGAACGCTTCCAGCCGTATACTGATGACGACTCTATCGGCGGTCTCTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 2:574319/140‑1 (MQ=255)
aCTTAGTTCTTTTCTTCTCT‑ACTGGTAGCACTCCAGCCACACCGCCGAACGCACCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 6:105931/140‑1 (MQ=255)
aCTTAGTTCTATTCTT‑TCTAAGTGGTATCACTACCGCCACACCGGCTAACGCATCCAGCCGTAAAGTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 8:180882/138‑1 (MQ=255)
aCTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCATCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg > 1:488450/1‑140 (MQ=255)
aCTTAGTGCTATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGACCGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 4:801396/140‑1 (MQ=255)
tttgTTCGATTCTTCTCT‑ACTGTTATCACAACCCCCACACCGGCTAACGCATCCAGCCGTAAAGTTAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 7:28082/135‑1 (MQ=255)
ttAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg > 7:842228/1‑138 (MQ=255)
tgtccGATTCTTCTAT‑ACTGCTATCACTACACCCACAACGGCGACCCCATCCCCCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGAt < 6:696801/136‑1 (MQ=255)
tttcttcTTT‑ACTGGTATAACACCCCCCACAAGGGCTAACGCAACCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 4:201996/139‑1 (MQ=255)
tttattctCT‑ACTGGTATCAATACCCCAACAACGGCGACCGCAGCCCGCCTTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 1:425752/136‑1 (MQ=255)
aTTTTTCTCT‑CCTGGTATACGTACCGCCCCAACGGCTACCGCTACCAGCCGAAAACTGACGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 4:580865/140‑1 (MQ=255)
aTTCTTCTCT‑ACTGGTATCACTACAGCCACACCGGCTAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 4:235450/140‑1 (MQ=255)
aTTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGTTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 2:510268/1‑140 (MQ=255)
aTTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGAATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 2:531349/140‑1 (MQ=255)
ttcttcTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatata > 5:3495/1‑139 (MQ=255)
ttcttcTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatata > 6:369644/1‑139 (MQ=255)
tcttctCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 8:468121/1‑138 (MQ=255)
ctct‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 1:357226/1‑140 (MQ=255)
ctct‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 2:630276/1‑140 (MQ=255)
tct‑ACTGGTATCACTACAGCCAAAACTGCGAACGCATCCCGCCGGAAAATGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 2:794380/140‑1 (MQ=255)
cTGGTATCACTACAGCCAAAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCGTGGAAAAGGCGATGCATATCTCGCTGGTgg > 6:666076/1‑139 (MQ=255)
tGGTATCACAACCCCAACACCGGCGAACGCATCCACCCGTAACCTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCt < 6:94522/140‑1 (MQ=255)
tGGTAACACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGCTCACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTg < 8:21990/138‑1 (MQ=255)
ttATCACTACAGCCACAACGGCGAACGCATACAGCCGGAAACTGATGACGACTCTATCGGCTGTCACTTCATTCATCTGCTGCACGGAGAAAAGCCTTCGCAAAGCTGTGAAAAGGCGATTCATATCTATCTTGTGCTGt > 4:113694/2‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCTTCCAGCCGGATACTGATGACGCCTCTATCTGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGAATATCTCCCTGGTGCTGt > 6:747987/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAACGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 4:248990/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 1:751535/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 4:460145/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 4:250344/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCAGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGCTGCATATCTCGCTGGTGCTGt > 1:747459/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAATGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 6:497112/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 7:655535/1‑138 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 6:653881/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 2:859744/1‑140 (MQ=255)
acctacaaGCAACAACGGCGAACGCATCCACCCGTAAATTTTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 6:851499/133‑1 (MQ=255)
acACTACCGCCACACCGGCTAACGCATCCTGCCGTAAACTTTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 3:323852/139‑1 (MQ=255)
aCTACAGCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCCCTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg > 7:592298/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCTTCTGCTGCACGGCGAAAAGCCGACGCAAAGCTGGCAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 2:327126/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGATAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 1:950521/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAATGCGAAGCATATCACGCTGGTGCTGTACGcc > 6:580269/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 3:26401/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 3:456049/1‑140 (MQ=255)
ctacccccACACCGGCCCACCCAACCTGCCGTAAACTTCTGACGACTCTATCGGCTGTCACTTCCTGCATCTGCTGCACGGCGAAAATCCGTCGCAAAGCTTGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGc < 8:690701/132‑1 (MQ=255)
cgcaccaACGGCGAACGCATCAACGCTTAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 6:199708/135‑1 (MQ=255)
cccaacaACGGCCAACGCACCCCCCCGTAAACATAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGAGGCATATCTCGCTGGTGCTGTACGCCGAaca < 2:66037/136‑1 (MQ=255)
gCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 2:520068/140‑1 (MQ=255)
gCCACAACGGCGAACGCATCCAGACGGAAACTGATGACGACTCTATCGTCGGTCACTTCCTGCATCTGCTTCACTGCGAAAAGCCGTCGCTAAGCGGGTAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac > 4:74277/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 2:321907/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 1:773377/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 4:849484/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 1:56725/1‑140 (MQ=255)
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ATGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCT‑ACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925150‑3925428
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
