Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,289 |
A→C |
16.8% |
N156T (AAC→ACC) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,289 | 0 | A | C | 16.8%
| 210.8
/ 13.7
| 117 | N156T (AAC→ACC) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (73/22); new base C (3/19); total (76/41) |
| Fisher's exact test for biased strand distribution p-value = 5.26e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 122 total aligned reads displayed.
CGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGT > NZ_CP022686/3925153‑3925426
|
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACCCCGTTTCTGGTGCGCGGGAGATTGCCGACAAACTGCTGGCGGCCCTTAGTTCGATTCTTCTGTACGGGGATCACTACAGCCACACCGGc > 5:178816/1‑138 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCgc > 8:828547/1‑139 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 8:447449/1‑140 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAACGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGCCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTTTCACTACAGCCACAgcggcg > 2:1006578/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCCCAACGGCg > 3:165175/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 3:674782/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 1:729873/1‑138 (MQ=255)
cGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTGGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAAc > 7:602669/1‑140 (MQ=255)
cGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAAc > 7:534242/1‑140 (MQ=255)
gCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAAc > 3:834284/1‑138 (MQ=255)
gCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTGTCTGGTGCGCGGGATAATGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCATCTCTACTGGTATCACTACAGCCACAAAGGCGAAc > 3:834287/1‑138 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa < 5:275781/138‑1 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa < 6:454403/138‑1 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATc < 7:204452/140‑1 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATc < 7:499368/140‑1 (MQ=255)
tttCCGCGCTCGGCGGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGGCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa < 5:417322/138‑1 (MQ=255)
cTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTAGCACTACAGCCACACCGGCGACCGCATCCAGCCGGAAAc > 2:925327/1‑138 (MQ=255)
gCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACtg > 4:468853/1‑138 (MQ=255)
cGCTGCCAGAAAAAGAGGGGACCACCGTTCTTGGGGGGCGGTATATGGCCGACACACTGCGGGCGGCACTTAGTTAGATTCTTAACAACTGGTTTCCAAACCCCCACACCGTCTAACGCATCCTGCCGTAAACTGATcac < 8:861115/140‑1 (MQ=255)
cGCTCCCCGAAAAACAGGGGAACACCGTTTCTGGTGCGCGGTATATTGCCTAAAAACTGCTGGCGTCACTTTTTTCTATTATTTCCTACTGGTATCAATCCAGCCTCAACGGCGAACGCATCCCGCCGTAAACtgatg < 6:330016/138‑1 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 7:628266/1‑140 (MQ=255)
gggggCACACCGTTTCTGGTGCGGGGTATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGTTATCACTACCGCCACACCGGCGAACGCATCCAGCCGTAAACTGATCACGACTCTATcggcg < 2:340442/137‑1 (MQ=255)
cggggCACACCGTTTCGGGGGCGGGGGATATTGCCGACAAATTGTTGGCGGCTCTTAGTTCGATTCTTCTTAACTGTTATCAAAACAGCCACACCGGCTAACGCTTCAAGCCGGAAAGTTTTGACGACTCTATCGGCGGt < 8:670388/139‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACCGCCACAACGGCGAACGCATCCAGCCGGCACCTGATGACGACTCTATcggcggg > 8:618196/1‑139 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATcggcg > 3:212983/1‑138 (MQ=255)
gggCACCCCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCCCAACGGCGCACGCATCCAGCCGGAAACTGCTGCCGACTCTATcggcggg > 5:307712/1‑137 (MQ=255)
acacCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACATAGTTCGATTCTTCTCTACTGGTATCACTACAGCCCCAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACt > 3:687253/1‑138 (MQ=255)
cacCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTTGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCCTCCAGCCGGAAACTGATTACGCCTCTATCGGCGTTCACtt > 6:312512/1‑138 (MQ=255)
ccGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCGACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGAGGACGACTCTATCGGCGGTCACTTcc > 5:324199/1‑138 (MQ=255)
ttatGGAGCGCGGGATATTGCCGACAAACTGCTGGCTTCACTTAGTTCGATTCTTCTCTACTCGAATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTAACGGCGGTCACTTCCTGCAta > 8:366003/4‑139 (MQ=255)
tCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCAt > 6:763744/1‑138 (MQ=255)
tCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCAt > 6:930085/1‑138 (MQ=255)
gTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg > 8:741993/1‑140 (MQ=255)
gcgcGGTATATTGCCGACAACCTGCTGCCGTCACTTCTTTCGATGCTTCTCAACTGGTATCACTACACCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg < 2:416790/138‑1 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg > 6:19852/1‑138 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCATCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg > 4:185524/1‑138 (MQ=255)
gcgGGATATTGCCTACAAACTGCTGGCGTCACTTAGTTAGATTGTTCTCTACTGGTAACACTACAGACCCAACGGCGAACGCAACCAGGCGGAAACTGCTGACGACGATATCTGCGGTCACTTCCTGCATCAGCTGCACg > 7:295272/1‑140 (MQ=255)
gcgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCGACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCtgctgcc > 3:39773/1‑137 (MQ=255)
ggATATTGCCGACAAACTGCTGGCGTCACTTAGTTGGATTCTTCTCTACTGGTATCCCTACAGCCACCACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCCCTTCCTGCATCTGCTGCACgg > 6:809452/1‑138 (MQ=255)
ggATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCTCTACCTGCATCTGCTGCACgg > 2:762382/1‑138 (MQ=255)
ggCCGAAAAACTGCTGGCGTCACTAAGTCCCATTCTTCTCACCTGTAAACACAACCGCCACACCGGCGACCGCACCCCGCCGCAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc < 8:807199/139‑1 (MQ=255)
ccGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc > 5:782122/1‑138 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGACCGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:169656/1‑140 (MQ=255)
aCAAACTCCTGGCGTCACTTAGTGCGATTCTTCTCTACTGGAATAACTACCGCCACAAGGGCGAACGCATCCAGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGt < 4:447614/138‑1 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCCAGGAGAAAAGCCGTCg > 4:192616/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 2:858718/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 1:243480/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 3:886772/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAACCCGTcc > 6:476272/1‑137 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGCACACTTCCTGAATCTGCTGCACGGCGAAAAGCCGTcc > 2:573957/1‑137 (MQ=255)
ctgcggGCGTAACTTAGTTCGATTCTTCTCTACTGGTATCACAACCGCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaa < 6:134292/138‑1 (MQ=255)
tgctgGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAAATGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaaa > 1:532839/1‑138 (MQ=255)
gCGTCACTTAGTTCGATTCTTCTCTACAGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGCCGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGa > 8:194584/1‑140 (MQ=255)
aCTTATTTCTATTCTTCTCTACTGTTATCAATCCAGCCACAACGCCGAACGCATCCGGCCTGAAACTGTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 1:612507/138‑1 (MQ=255)
aCTTAGTTCTATTCTTCTATACGGTTATCACTACAGCAACAACGGCCAACGCATCCAGCCGTAAACTTAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 6:606502/138‑1 (MQ=255)
aCTTAGTTCCATTCTTCCATACTGGTCTCACTACAGCCACACCGGCGAACGCATCCAGCCGGAAACTGCTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 8:727060/140‑1 (MQ=255)
gttAGGTCGATTCTTCTCACCTGGTATCACAACCTCCACCCCGGCTAACGCATCCAGCCGGAAAATGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGc < 8:237665/139‑1 (MQ=255)
cttctttCGATTCTTCTATACGGGTATCAATACCGCACCAACGGCGAACGAATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAg < 2:911686/133‑1 (MQ=255)
cTTAGTTCGATTCTTCTCTCCTGTTAGCCATACCGCAACAACGCCTAACGCATACCCCCGCAAACTTCTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGc < 8:573247/140‑1 (MQ=255)
gTTCTATTCTTCTCTACTGGTATCACTACACCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGa < 3:630571/138‑1 (MQ=255)
gTTCGATCCTTCTGTACTTGTATCACTACCGCCACACCGGCTAACGCACCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGa < 6:718001/138‑1 (MQ=255)
tCGATTCTTCTATAGTGGAATCACTCCCCCCACAACGGCGACCGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCa < 7:675081/140‑1 (MQ=255)
cGATTCTTCTCTACTGGTATCACAACAGCCACAACGCCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGAGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGc > 1:283702/1‑138 (MQ=255)
tttcttcTCTATGGGAAACAAAACAGCAACAACGTCGAACGACTCCATGCGTAAACAGCTGACGACTCTATAGGCGGTCACTTCCTGCATCTGCTGCACTGCGAACAGCCGTCGCAAAGCTGTGAAAAGGAGATGCat < 6:253282/137‑1 (MQ=255)
tttattctCTAGTGGTATCACTACACCCACACAGGGGAACGCATCCTGACGTAATGTCATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCTCGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 8:842551/136‑1 (MQ=255)
ttacttctCTAGTTGTTACACTACCGCCACACCGGCTAAGGCATCAAGCCGTAAACTCATGACGAGTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 3:528175/135‑1 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGCACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCCCGGCGAAACGCCGTCGCAAAGCTGGGAAAATGCGCTGCATAtct > 8:852526/1‑140 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATTCatat > 6:26573/1‑138 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 4:328731/1‑138 (MQ=255)
cttctCTACTGGTATCACTACAGCAACAACGGAGAACGCATCCAGCCGGAAACTGAAGACGACTCTATAGGCGTTAACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGTCGATGCatata > 1:595597/1‑137 (MQ=255)
tgtctACTTCTATAACTAACGCCACAAGGGCTAACTCTTCACGCCGTAAACTTTGGACGACTCTCTCGGCGGTCCCTTCCTTCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAACGGCGATGCATAtctc < 6:717511/136‑1 (MQ=255)
tctctcCTGGCTTCACAACAGCCACAACCGCGACCTCACCCCGCCGTAAACTTATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtctc < 5:74988/138‑1 (MQ=255)
tctaTACTGTTATCACAACAGCCACACGGGCTACCCCATCCCCCCGTAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 7:447449/140‑1 (MQ=255)
ctctCCTGGAATCACTACCCCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCg < 1:141027/138‑1 (MQ=255)
ggTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGc > 1:367667/1‑138 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 4:804296/1‑138 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACATCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 1:552241/1‑138 (MQ=255)
aTCACTACAGCCACAACGGAGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 6:941321/1‑138 (MQ=255)
tCAATACACCCACAACGGCGAACGCATCCCGCCGTAACCTGTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 4:629472/138‑1 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 2:883954/1‑138 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 3:335375/1‑138 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 2:495612/1‑138 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 2:1038288/1‑138 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 1:423120/1‑138 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCATGCATATGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATATCGCTTGTGCTTTAc > 4:720218/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg > 3:242511/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 7:330139/1‑140 (MQ=255)
cTACGGCCACACCGGCGAACGCATCCAGCCGTAATCTTAGCACGTCTCTATCGGCTGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGATAAGGCGATGCATATCTCGCTGGTGCTGTACGc < 5:609472/138‑1 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 1:800888/1‑138 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 1:490538/1‑138 (MQ=255)
cccACACGGGCGAACGCATCCAGCCTTAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 8:362922/139‑1 (MQ=255)
cccACACCGGCTACCGCACCCCGCCGAAAAATCCGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 7:28158/139‑1 (MQ=255)
cccACACCGGCGACCGCATCCCGCGGGAAAGTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAac < 5:507732/137‑1 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAtca > 3:863531/1‑138 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTAGCTGGTGCTGTACGCAGcaca > 3:764816/1‑138 (MQ=255)
caACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 8:358233/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGCTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGACCACGAGt > 8:677565/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg > 8:533286/1‑116 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 6:195719/1‑138 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 4:746858/1‑138 (MQ=255)
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CGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGT > NZ_CP022686/3925153‑3925426
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
