Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,289 |
A→C |
16.2% |
N156T (AAC→ACC) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,289 | 0 | A | C | 16.2%
| 259.2
/ 10.8
| 144 | N156T (AAC→ACC) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (87/29); new base C (3/24); total (90/54) |
| Fisher's exact test for biased strand distribution p-value = 9.13e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 152 total aligned reads displayed.
CGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925153‑3925428
|
cgcACCGGCGGTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAAc < 7:260609/138‑1 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 3:549361/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCgc > 1:231649/1‑139 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCgc > 3:692789/1‑139 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 1:1018964/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 2:544871/1‑140 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 8:188157/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 8:48890/1‑138 (MQ=255)
ggCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCCCACCGTGTCTGGTGCGCGGGAGTTTGCCGTCAAACTGCTGGCGTCTCTTAGTTAGATTCGTCTCGTCGGGTAACGCTACACCCACACCGGCgcg > 7:980780/1‑136 (MQ=255)
ggCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACGTAGTTCGATTCTTCTCTAATGGTATCACTACAGCCACAACGGCGaa > 8:838569/1‑138 (MQ=255)
gCGATTCCGCGCTCGGCTGCACGCTGCCAGAAAATGACGGGCGCACCGATTCTGGAGCGCGGGATATTGCCGACACACTGCTGGCGTCACTTAGTTAGATTCGTCTCTACTGGTATCAATACAGCAACAACGGccccc > 7:785965/1‑134 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCTCACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATc < 1:961607/140‑1 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa < 8:325159/138‑1 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATc < 3:727376/140‑1 (MQ=255)
tgtCCGCGCTCGGCTGCACGCTGCCAGAAAACGAGGCGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATc < 3:1039190/138‑1 (MQ=255)
gcgcTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTCGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCCCTTAGTTCGATTCTTCTCTACTGGTATCACTACCGCCACACCGGCGAACGCATCCAgac > 3:320705/1‑138 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGCGGGGCACACCGTTTCTGGGGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGCCGAACGCATCCAGCCGGa < 8:156645/138‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGCCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCTATTCTTCTCTACTTGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGaaa < 5:697110/140‑1 (MQ=255)
ctgtGCCAGAAAATTCGGGTCAAACCGTTTGTGGTGCGGGGTATTTTGCGGACAAATTGCTGGAGTCACTTAGTTCGTTTCTTCTATCCTGTTATCACTACAGCCACAACGGCTAACGCATCCAGCGGTAAACTTATgac < 4:519392/137‑1 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACACCGGCGAACGCATCCAGCCGGATACTGATgacgac > 4:335787/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 6:380665/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTAGACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 4:1022028/1‑140 (MQ=255)
gCCAGAAAATTAGGCGCACACCGTTTCTGGGGCGGGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTATTCTCTCCTGGTATCACTACCGCAACAAGGGCGAACGCACCCAGCCGTAAACTGATGACGAct < 6:681188/140‑1 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 8:746171/1‑138 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGActc > 1:1056029/1‑140 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGAGAACGCATCCAGCCGGAAACTGATGCCGActc > 4:247824/1‑140 (MQ=255)
agagGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTGTCGACTGGTATCACTACCGCCACAACGGCGAACGCATCCAGCCGAAACCTTCTCACGAGTCTATcggcg > 5:253573/1‑140 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAATCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCAATACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGt < 6:663812/140‑1 (MQ=255)
gggCCCACCGTTGCTGGTGCGCGGGATATGGCCGACAACCTGCTGTCGACACTTAGTTCGATTCTCCTCTACTGTAAACACTACACCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCa < 2:691823/140‑1 (MQ=255)
ggccaccCCGTTTCTGGTGCGGGGTATATTGCCGACAACTTGCTGGCGTCAATTAGTTCTATTCTTCTCTACTGGATTCACTACAGCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGt < 7:312421/135‑1 (MQ=255)
gCACACCGTTTCTGGTGAGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACt > 1:879311/1‑140 (MQ=255)
cacCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTcc > 6:406124/1‑140 (MQ=255)
ccGTTTGTGGTGCGGGGGATATTCCCGACAACCTGCTGCCGTAACTTATTTCTATTATTCTCTACTGTTATCACTACACCCCCACGGCCGAACCCATCCAGCCTCAAACTGATGACGACTCTATCGGCGGTCACTTCCTg < 2:999341/140‑1 (MQ=255)
gttttCTGGTGCGCGGTATTTTGCCGACAACCTGCTGGCGTCAATTTGTTCTATTCTTCTATACTGGTATCACTACTGCCACACCGGCTAACGCATCCACCGGTAAACTGTTGACGACTCTATCGGCGGTCACTTCCTGc < 2:1056029/138‑1 (MQ=255)
ggTTTCTGGTGCGGGGTTTATTGCCGACAAAGTGCTGGCGTCACTTAGTTCTATTCTTCTCTACTGGTATCACAACAGCCACACCGGCTAACGCATCCCGCCGCAAACTCTTCACGACTCTATCGGCGGTCACTTCCTGc < 6:929992/139‑1 (MQ=255)
cGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTACGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGc > 1:233228/1‑140 (MQ=255)
tttCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCAt > 1:375002/1‑140 (MQ=255)
tttCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGACGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCAt > 2:144599/1‑140 (MQ=255)
gTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg > 5:1029123/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCCCAACGGCGAACGCATCCAGCCGGAAACTTCTGACGACTCTATAGGCGGTCCCTTCCTGCATctgcttcc > 3:139770/1‑137 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 5:929992/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAAAGCATAAAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTACTGCATCTGCTGCa > 3:331576/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTATTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCtgctgcc > 4:996220/1‑139 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCAc > 8:43577/1‑138 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACgg > 4:999788/1‑140 (MQ=255)
ggcccaaaaaCTGCTGCCGTCAATTAGATCGATTCTTCTATACTTGACACACTACCGCCACCCCGGCGAACGCATCCCGCGGTAAACTGCTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc < 3:258664/133‑1 (MQ=255)
ccGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCg > 4:78547/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 2:424650/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATAGGCGGTCACTTCCTGAATCTGCTGCACGGCGAAAAGCCGTCg > 5:1026636/1‑140 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCCCGGCGCAAAGCCGTCg > 7:742953/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 8:15036/1‑138 (MQ=255)
aCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAGCGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaaa > 5:874127/1‑140 (MQ=255)
tggctgGCGTCACTTAGTTCGATTCTCGTCTAGTGGTCACCCAAACCCCACAACGGCTAACCCCCCCAGCCGGAAACTGCGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 5:249604/138‑1 (MQ=255)
ctgctgGCGTCACTTAGTGCAATTCTTCACTAATTGTATCACAACCCCCAAACCGCCGAACGCAGCCCGCCGAAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaa < 8:173187/138‑1 (MQ=255)
ctgcggGCGTCACTTAGTTCTATTCTTCTCAAGTGTTATAACTACAGCCACAACGGCTAACGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 6:1029123/140‑1 (MQ=255)
atgctgGCGTCACTAAGTTCTATAATTCTCTCCTGGTATCACTACCCCCAAAACGCGGAACGCACCCCGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 5:759036/139‑1 (MQ=255)
gctgGCGTCACTTAGTTCGATTCTTCTATACTGGTATCACTACAGCCACAACGGCGCACGCATCCAGCCTGAAACTGATGACGAATCTATAGGCGGTCAATTCCTGCATCTGCTTCACGGCGAAAAGCCGTCGCATAGcg > 6:787091/1‑139 (MQ=255)
actaggTTCGATTCTTCTCGACTGGTACAACTACAGCCACACCGGCCACACAACCCCGCAGAAAACGGATGACGACGCTATCGGCGGTCACTGACTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGTGaaaa < 7:152528/133‑1 (MQ=255)
aCTTAGTTCGATTCTTCTCTACTGGTATCACACCACCCACAACGCCTAACGCACCCCGCCGTAAACTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 5:380665/140‑1 (MQ=255)
ttttgTTCGTTTATTATATCCTGTTATCATTACCCCCACAACGGCTATCGCATCCTGCCTTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGc < 6:199580/136‑1 (MQ=255)
attAGTTCGATTCTTCTCTACTGGTATCACTCCCGCCCCACCGGCGAACGCAGCCAGCCGTAAACTTAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAg < 8:486564/137‑1 (MQ=255)
ttAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAAAGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg > 4:475427/1‑140 (MQ=255)
gtAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGGCACTTCCTGCAGCTGCTGCACGGCGAAACGCCGTCGGAAAGCGGGGAAAAgg > 8:56079/2‑138 (MQ=255)
ttCTATTCTTCTCTACTGGTAACAATACAGCCACACCGGCTAACGCATCCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGc < 2:345195/140‑1 (MQ=255)
tCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAACGCCGTCGCAAAGCTGGGAAAAGGCGATg > 8:736012/1‑138 (MQ=255)
ccGATTCATCTAAACTGGATTCCCTCCAGCAACCTCGGCGTACGCTCCAAGCCGCAAACGGCTGACGTCTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGGCGCAAAGCTGGGAAAAGGCGATg < 7:904609/137‑1 (MQ=255)
gATTCTTCTATACTGTTATCAATCCAGCCACAACGCCGAACGCATCCTGCCGGAAACTTAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCata < 4:762025/140‑1 (MQ=255)
attattCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 3:563304/1‑140 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACACCGGCCAACGCATCCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTTCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtct < 6:89540/140‑1 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 7:140347/1‑138 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 2:1104045/1‑140 (MQ=255)
tgtagtGGAATCACTACACCCAAAAGGCCGAACGCAGGCAGCCTGAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 5:507356/135‑1 (MQ=255)
tctACTTGTATCAAAACCGCCACACCGGCGAACGCATCCCGCCGGAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 3:777100/140‑1 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 4:28556/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 5:808154/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 6:636642/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 4:486158/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 4:181427/1‑140 (MQ=255)
tCACTACAGCTACCACGCCTAACGAATCAAGCCGTAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 2:913203/140‑1 (MQ=255)
acacaACAGCCACACCGCCTACCGCATCCCCCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 2:406349/139‑1 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 2:347228/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 1:411744/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 6:585692/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 2:790504/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 2:352709/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGAGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 3:167854/1‑140 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAACGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 7:230160/1‑138 (MQ=255)
cgCCACAACGGCTAACGCAACCAGCCGAAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGaa < 8:702564/137‑1 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacc > 2:354177/1‑139 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacc > 2:580171/1‑139 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 3:52834/1‑140 (MQ=255)
gCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac > 1:67026/1‑140 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACTCCGAACACg > 3:49387/1‑140 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGCACACg > 3:282637/1‑140 (MQ=255)
acaACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc > 7:30125/1‑117 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg > 3:700255/1‑118 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 4:700255/118‑1 (MQ=255)
caACGGCGAACGCATCCAGCCCGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 3:178731/1‑140 (MQ=255)
aaCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGtt > 2:530968/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 6:201796/1‑140 (MQ=255)
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CGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925153‑3925428
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
