Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,394,287 |
T→G |
14.1% |
N115T (AAC→ACC) |
chuS ← |
hematinate‑forming heme oxygenase ChuS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,394,287 | 0 | T | G | 14.1%
| 415.9
/ 18.3
| 248 | N115T (AAC→ACC) | chuS | hematinate‑forming heme oxygenase ChuS |
| Reads supporting (aligned to +/- strand): ref base T (82/121); new base G (38/3); total (122/126) |
| Fisher's exact test for biased strand distribution p-value = 1.66e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 259 total aligned reads displayed.
CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTA > NZ_CP022686/2394148‑2394423
|
cgTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATCCTCTGGCGTTCGCCACGAGCCgtgt > 4:42088/1‑140 (MQ=255)
cgTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCgtgt < 5:75034/140‑1 (MQ=255)
cATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCCTCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGttttggtgt > 5:819041/1‑135 (MQ=255)
cATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 8:1121733/140‑1 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCt > 5:245440/1‑136 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCt < 6:245440/136‑1 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGa > 8:289835/1‑140 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCAGAAACTTTTAGTAATGCATCGCCCTGATGAGCAAAGAACTGACTACTCTGGCGGTCGCCACGAGCCGTGtttggattgg > 4:851301/1‑133 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGATTACTCTGTCGTTCGCCACGAGCCGTGGGTTCTTTGAt > 4:1178787/1‑140 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTtttattttat > 5:656908/1‑140 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 1:1200642/138‑1 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 1:820156/138‑1 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt < 3:1202789/140‑1 (MQ=255)
cGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGa > 2:151584/1‑138 (MQ=255)
gATAACCCGTGCCAGAAGCGCACTCCATGCCGCCATATCTGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGa < 5:950763/140‑1 (MQ=255)
aCCGTGCCAGAAGCTCACTCCCTGCCGCCTTATCGGTATTGTCGGTGGCATATACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCCCGAGCCGTGTTTTCTTTGATGTGGAAAaca < 4:950611/140‑1 (MQ=255)
aCCGTGCAAGAAGCTCACTCCATGCCGACATATCGGTATTGTCGGTTGCTTAATCTTTTAGTAATGCATCGCCCTGATTATAAAACTACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGaaaa < 1:516147/138‑1 (MQ=255)
ccGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGTTGTGGAAAac > 2:1046310/1‑138 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTCTTTGATGTGGAAAAAAC‑Tgg > 6:1109309/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTATTTGGGAAAACC‑Tgg > 7:582743/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATTTGGAAAAAAC‑Tgg > 7:1048707/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGGTTGATGTGGAAAAAAA‑Tgg > 6:1160798/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑Tgg > 6:550290/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑Agg > 7:873660/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTTTTTTTTGTGGtaaaaaaagg > 5:99853/1‑134 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTTATTTGGAAACCAC‑Tgg > 3:297063/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGAAAACAC‑Tgg > 8:247968/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGACCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGGGGAAAAGAC‑Tgg > 5:320879/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCAGATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGATTACTCTGGCGTTCGCCACGAGCCGTGTTGTCTTTGATGTGGAAAACAC‑Tgg > 6:377449/1‑140 (MQ=255)
tGCCAGAAGCGCACTCCATGCCGCCATATCGGTAATGTCTTTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑Tgg < 6:789/140‑1 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTCTTTGATGTTGCAAACAC‑Agg > 2:1075226/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAACAC‑Tgg > 2:1142628/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTTTGTGGTAAACAC‑Tgg > 1:1242139/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGcc < 8:883681/140‑1 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCAGATGATCAAAGAACTGAATACTCAGGCGTTCGCCACGAGCCGTGGTTTGTATGATTTGGAAAACAC‑Tgg > 2:47113/1‑138 (MQ=255)
aGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAAGACTCTGGCGTTCGCCACGCGCCGTGTGTTAGTTGATGTGGAAAACCC‑GGGcc > 2:754592/1‑138 (MQ=255)
aGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAATAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTTATTTGGGAAAAAC‑AGGCCCattg > 5:1178578/1‑140 (MQ=255)
cTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTgag < 8:842813/140‑1 (MQ=255)
tCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTAATTGATTTGGAAAAAAA‑AGGCCCATTGATTgtga > 3:1025048/1‑140 (MQ=255)
caagccgccATATCGGTTTTGTCGGTGTCATTAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGTCCCATTGATTgaga < 2:993011/135‑1 (MQ=255)
aTGCCGCCATATCGGTAGTGTCTGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAAc < 4:296028/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTAGTTTATGTGGAAAAACC‑AGGCCCATTGATTGAGAAACa > 3:78278/1‑140 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTATTTGGAAAACAC‑AGTCCCAATGATTTTGaaaaa > 7:1144888/1‑138 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACa < 5:1043694/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACa < 4:49275/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACa < 4:772255/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTAGGTGGTGTGGTAAACAC‑AGGGCCATTGATTGAGAAACa > 4:1036312/1‑140 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTTATGTGGAAAACAC‑AGGCCCATTTATTGAGAAAcc > 3:310736/1‑139 (MQ=255)
ggcctccATATCGGTATTGTCGTTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAATAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACa < 5:476551/139‑1 (MQ=255)
gccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGTGTTCGCCACGAGCCGTGTTTTGTTTTATTTGGATAACAC‑TGGCCCCTTGATTGAGaaaaac > 8:635040/1‑137 (MQ=255)
gccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCGTTGAAGTGGAAAACAC‑AGGCCCAATTAATGAGAAACaa > 6:728893/1‑139 (MQ=255)
ccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTATGTGGAAAACCC‑AGGCCCAATGTTTTAGaaaaa > 1:703655/1‑136 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGAAAACAC‑TGGCCCAATGATTGAGAAACAGACCTa > 6:867076/1‑140 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCCTCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcgcg < 6:6708/140‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcgcg < 4:1223854/140‑1 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCGTTTATGTGGAAAAACC‑GGGCCCATTGATTGAGAAACAGACGTAAATACACcgcgcgcg > 3:173388/1‑140 (MQ=255)
tGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTAGTTTATTTGGTAAAAAA‑AGGCCCCATGATTGAGAAACAGACGTAAATCAAGcgcccgcg > 1:215120/1‑138 (MQ=255)
cctAAACATTTAGTAATGCATCGCCCTGAAGATAAAAGAACTGAATACACTGGCGCTCGCCACGAGCCGTGTTTTCTTTGATGCGGAAACCAC‑TGGCCCATTGACTGAGAAACAGACGTAAATCCAGCGCGCGCGGAt < 1:98587/136‑1 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTg < 7:443587/140‑1 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTTGTTGATGTGGAAAAAACAGGGCCCATT‑ATTGGGAAAAAGACGGAAATACAGCGCCCGCCGaatt > 5:1116718/1‑137 (MQ=255)
cATAAACTTTTAGTAATGCATCGCACTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGTATAAAC‑AGGCCCAATGTTTTATTAACAACCGTAAATACAgcgcgccccgcg > 1:1016362/1‑132 (MQ=255)
aCTTTTAGTAATTCATCGCCCTGATGATCACAGAACTGAATACTCAGGCGTTTGCCACGAGCCGTGGTTTCTTTGATGTGTAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGAGCGCGGATTGAGGAt < 5:1079415/140‑1 (MQ=255)
cTTTTAGTAATGCCTCGCCCTGATGAGCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGa < 1:401677/138‑1 (MQ=255)
tttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCAATGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 3:239433/140‑1 (MQ=255)
ttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAAt < 3:613474/140‑1 (MQ=255)
ttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTTATGTGGAAAACAC‑AGGCCCAATGAATGATATAAAGACGGAAAACACGCGCGCGCGGCATTAGGCTCaaa > 5:63674/1‑139 (MQ=255)
ttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGGTGTTGAAAACACTTGGCCCATTTA‑TGTGAAAAAGACGTAAATACCGCGCGCGCGGGTTGATGGTCAAt > 7:233950/1‑140 (MQ=255)
ttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTTAAGTGGAAAACAC‑TGGCCCATTTATTTAGAAAAAGACGTAAATACAGCGCGCGCGGACTGAGGATaaaa > 7:1144172/1‑139 (MQ=255)
tAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGCTTTAGGATCAAta > 4:825159/1‑139 (MQ=255)
tGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTATGTTGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAAACCCGCGCCCGCGGCTTTAGGGTCAAACCGGCAt > 5:797123/1‑140 (MQ=255)
cATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAaca < 2:875943/74‑1 (MQ=255)
aTCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGTAAACAC‑TGGGCCAGTGATTGAGAAAAAGACGTAAAAACAGCCCGCGCGGATTGCGGTTCAATCCGGCATg > 2:326103/1‑138 (MQ=255)
aTCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTc < 7:373197/140‑1 (MQ=255)
cGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGAAGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATACAGCGCGCGCGGCTTGAGGATCAATCCGGCATggacg > 4:75428/1‑136 (MQ=255)
ccTGATGATCAAAGAACTGAATAATCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGt < 2:1020454/138‑1 (MQ=255)
tcatCAAAGTACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCGATTGATTGAGAAACAGACGTATATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATg < 4:147950/138‑1 (MQ=255)
tatCAAAGAACTGAATACTCTGGCGTTCGCCACTAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGc < 8:537327/139‑1 (MQ=255)
gatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGc < 4:1059071/140‑1 (MQ=255)
atCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCt < 3:429915/140‑1 (MQ=255)
cAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTATGTGGAAATCAC‑TGGCCCATTGATTGAGAAACAGACGGACATCCAGCGCGCGCGGCTTGAGGCTCAATACGGCATGTCCCTTGAAATggggg > 8:794909/1‑136 (MQ=255)
cAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt < 7:262864/49‑1 (MQ=255)
gacagaTACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑GGGCACTTTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGG‑‑‑‑‑‑CGTTCAAATGCTGGTTTGTGAACg < 1:892210/133‑1 (MQ=255)
tGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGaa < 7:712867/140‑1 (MQ=255)
tGGCGTTCGCCACGAGCCGTGTTTTCGGTTGTGTGGAAAACCC‑TGGCCCAATGGTTGTGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGGTCAATGCGGCATGTCCCGTCAAATGCTGGTTTGGTAACGCCCCaaa > 8:100874/1‑139 (MQ=255)
tGGCGTTCGCCACGAGCCGTGGTTTGGTTGATGTGGGAAACAC‑TGGGCCAGTGTTTGAGGAACAGCCGTAAATACAGCGCGCGCGGATTGGGGCTCGATCCGGCCAGTCCGGTGACATGCTGGTTTGTTTACGGACCacc > 8:676722/1‑138 (MQ=255)
gtcGTTAGCCACGAGCCGTGGTTTCTTTGATGTGGAAAACAC‑TGGCCCATTTATTGAGAATCAGAAGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCGCTTCAAATGCGGGTTTGTGAACGCACCaagt < 6:162649/138‑3 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 6:1056086/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 3:829310/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 4:230410/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 4:681370/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 6:349379/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAGTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 3:703189/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGGGTTTGCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAGTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 6:961851/140‑1 (MQ=255)
ggTTCTCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTTATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACttt < 4:611441/139‑2 (MQ=255)
cGTTCGCCACGAGCCGTTTTTTCTTTGATGTGTAAAACAC‑TGGCCCATTGATTGAGAAACAGAAGTAAATCCAGCGCGCTCGGATTGATGATCAATCAGGCATGTCCGTTCAAATTCTGGCTTGTGTACGCACCAACTTg < 8:148319/140‑1 (MQ=255)
aCGAGCCGGGATTTCTTTGATGTGTAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCCGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCTAATGCTGGTTTGTGAACGCACCAACTTGTTCATg < 1:1078726/138‑1 (MQ=255)
cGAGCCGTGTTTTCTTTTATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGAc < 7:1001039/140‑1 (MQ=255)
cGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACCTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGAc < 3:945691/140‑1 (MQ=255)
gAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 1:743368/138‑1 (MQ=255)
gCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGc < 4:474044/140‑1 (MQ=255)
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CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTA > NZ_CP022686/2394148‑2394423
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
