Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,394,287 |
T→G |
14.2% |
N115T (AAC→ACC) |
chuS ← |
hematinate‑forming heme oxygenase ChuS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,394,287 | 0 | T | G | 14.2%
| 413.0
/ 29.4
| 250 | N115T (AAC→ACC) | chuS | hematinate‑forming heme oxygenase ChuS |
| Reads supporting (aligned to +/- strand): ref base T (82/127); new base G (38/2); total (120/130) |
| Fisher's exact test for biased strand distribution p-value = 1.37e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 257 total aligned reads displayed.
CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTATT > NZ_CP022686/2394148‑2394425
|
ggTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCgtgt < 7:447891/139‑1 (MQ=255)
gTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGCATACTCTGGCGTTCGCCACGAGCCGTGtt > 8:239437/1‑140 (MQ=255)
tATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGttt > 2:17717/1‑140 (MQ=255)
ctcATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCtt < 6:712287/140‑1 (MQ=255)
aaTCGGGGATAACCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 6:971865/139‑1 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGa > 2:712116/1‑140 (MQ=255)
tCGGTGATAACCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGGCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCACAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt < 8:638981/140‑1 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 4:386541/138‑1 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt > 6:506017/1‑140 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCAAGAGCCGTGGTTTTTTTgtt > 5:565068/1‑138 (MQ=255)
tGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGtttgtttgtgttgt > 1:1028296/1‑134 (MQ=255)
gATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGa < 6:1041942/140‑1 (MQ=255)
gATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGa < 5:325363/140‑1 (MQ=255)
gATAAACCGTGCCAGAAGCGCACTCCAAGCCGCCATATCGGTATTGTCTGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGa < 6:128995/140‑1 (MQ=255)
aCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAaca < 1:356239/140‑1 (MQ=255)
ccGTGCCAGAAGCGCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCTCGAGCCGTGTTTTCTTTGATGTGGAAAacac < 1:1052800/140‑1 (MQ=255)
cGTGCCAGAAGCGCACTCCATGCCGCCATATCGGTATTGGCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAACGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACt < 5:1027351/140‑1 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATTATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTAGATGCTGTGGATATCCCT‑gg > 6:81747/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGGTTTAATTGATGTGGATAACACA‑gg > 6:79495/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑gg > 2:591518/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑gg > 1:474926/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑gg > 1:803876/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGAAAACACA‑gg > 5:71227/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGTTGTGGAAAACACT‑gg > 7:701173/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTTATGTGGGAAACACA‑gg > 7:885992/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTGTCGTTGATGTGGAAAACACT‑gg > 6:187251/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTACGCCACGAGCCGTGTTTTCTTTTATTTGGAAAAAACT‑gg > 8:27262/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACGGAATACTCTGGCGTTCGCCACGAGCAGTGTTTTATTTGTGGTGGAAAACACA‑gg > 5:445375/1‑140 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGcc > 8:366773/1‑140 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTTGTAAACAAT‑gg > 4:405719/1‑138 (MQ=255)
cTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGCTGGTGCAAACAAA‑GGCCCatggattg > 3:238857/1‑138 (MQ=255)
cATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGaaa < 6:499129/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTTTGTGGTAAACACA‑GGCCCatttattgttaaaaa > 1:194422/1‑133 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGaaa < 4:887184/138‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGaaa < 4:550023/138‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACa < 1:712116/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTGTTGTTTTATGTGGAAAAAACA‑GGGCCAatgtttgatagaaa > 7:315319/1‑134 (MQ=255)
ccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACa > 4:267061/1‑138 (MQ=255)
ccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATAAAAGAACTTAATACTCTGGCGTTCGCCACTAGCCGTGTTTTAGTTGTATTGTAAAACACA‑AGAACAATGATTTAGAAACa > 4:580673/1‑138 (MQ=255)
accATATCGGTATTGTGGGTGGAATAAACTTTTAGTAATGCATCGCCCTGATGATCTAAGCACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTAGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGa < 4:825216/137‑1 (MQ=255)
ccATATCGGTATTGTCGGTGGAATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCTCCGTGGTTTAGTTGATGTGGCTAACCCG‑GGGGCAGTGATTGCGacaccgtcgg > 6:30380/1‑134 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTTGTAAAAACT‑GGCCCATTGAATTAGAAACAGACGTa > 6:508147/1‑140 (MQ=255)
tatCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTa > 4:867143/1‑138 (MQ=255)
aTTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcg < 7:188648/140‑1 (MQ=255)
tCGGTTGCATAAACTTTTAGTAATGCATCGCCCTTATGATGAAAGAACTGTATACTCTGGCGGTCGCCACGAGCCGTGTTTTCTTTGATGTGGATAACACT‑GGCACATTGATTGAGAAACAGACGTAAATCCAgggcgcg < 8:837220/140‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTACTGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcg < 3:806952/138‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcg < 3:548213/138‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGAAAACACT‑GGCCCATTGATTTAGAAAAAGAAGTAAATCCAgctcgcc > 6:1011828/1‑139 (MQ=255)
gcGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGCTCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcgcg < 8:31955/139‑1 (MQ=255)
gcGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcgca < 4:969592/137‑2 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCCAGAGCCGTGGTTTTGTTGTTTTTGAAAACACT‑GGCCCATAGGTTGTTAAAGAGAAGTAAAAACAGcgcgcacg > 7:995851/1‑140 (MQ=255)
tGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAAAAGACGTAAATCCAGCGCGCCCGGa > 8:894784/1‑140 (MQ=255)
ggCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATTTTTTAAAAACT‑GGGCCAATGATTGTGAAAAAAACGTAAAAACAGCGCCCCCGGAt > 7:178064/1‑140 (MQ=255)
gCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGTTTTTGTAAACACT‑GGCCCAATGTTTTAGAAAAAGCCATAAAAACACCCCCCGCGGa > 3:126079/1‑138 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCCCGAGCCGTGTTTTCTTTGATGTGGTAAACACG‑GGCCCATTGATGGCTAAACAGACGTAAATCCAGCGCGCGCGGATTg > 8:454741/1‑140 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATTTTGAAAACACT‑GGCCCATTTATTGAGGAACAGACGTAAATCCCGCGCGCGCgggt > 4:988860/1‑136 (MQ=255)
tAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAg < 1:714643/140‑1 (MQ=255)
tAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTTTTTTATTTGGAAAACACG‑TGTCCCTTGATTTTGAAACAGCAGTAAATCCCACGCGCGCGGAATgtg > 5:214616/1‑138 (MQ=255)
aCTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGTTTTTGAAAACACT‑GGACCAATGATTTAGAAACAAACCTAAATCCACCGCCCGCGGGGTGAgg > 3:1085423/1‑138 (MQ=255)
tttATTAATTCATCTCCCTTATTATCAAAGAACTGAATACTGTGGAGTGCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAAT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCTGATTGAGGATCaa < 2:450829/140‑1 (MQ=255)
tttAGTAATGCATCGCCCTGATGATCTTAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 7:696293/140‑1 (MQ=255)
ttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGGTTGTTTGATGTGGAAAAAACTGGGCCCGTTG‑TTGAGCAACAGACCTAAATCCAGCGCGCGCGGAGTTAGGATccaa > 5:534887/1‑137 (MQ=255)
tAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCgg < 2:235631/140‑1 (MQ=255)
aTGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTTTTTGATGTGGGAAACACA‑GGCCCCATTATTTCGAAAAAGACGTAAATACAGCGCCCCCCGCTTGAGGATAAATACGGCa > 1:292976/1‑140 (MQ=255)
gCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTATTTGGAAAACAAT‑GGCCCCTTGGTTTCGAAAAAAACGAAAATCAAGCGCGCCCCGATTGAGGATGAATACTGCaag > 5:961660/1‑138 (MQ=255)
cccTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTTTTTTTTGTGGAAAACACA‑GGTCCATTTATTTAGAAAAAAACCTAAATACAACCCGCCCCGATTCATGAACAAAACGGCATGTCCggt > 1:682730/1‑138 (MQ=255)
gatgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTATGTGGAAAAAAAT‑GGCCCATTGAATTAGAAACAAACGGAAAAACACACCGCGCGGATTGAGGCTCAATCCCGCAAGTACGCTCaaa > 6:174949/1‑140 (MQ=255)
atgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAATTGGAAAAAACA‑GGCCCATTGTTTTAGAAAAATACGTAAATACAGCCCACCCGGAATGAGGCTCAATACCGCAAGTGCCTTCaaaa > 2:947010/1‑139 (MQ=255)
tgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCCTTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATAAATCCGGCAAGTCCGTTCaaa > 3:638234/1‑138 (MQ=255)
gatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTGTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGc < 2:478308/140‑1 (MQ=255)
aGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCAGTTATTGAGACACAGACGTAAATACAGCGCGCGCGGAATGAGGATAAATCCGGCATGTCCGTTCAAATGATGGttt > 2:647711/1‑140 (MQ=255)
cTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGa < 2:57734/140‑1 (MQ=255)
cTGAATACTCTGGCGTGCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGa < 7:670141/140‑1 (MQ=255)
tGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTtgtg < 3:843417/138‑1 (MQ=255)
tGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGaa < 5:460692/140‑1 (MQ=255)
aaTACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACg > 8:175653/1‑140 (MQ=255)
aaTACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGGAAACACT‑GGCCCCTTGATTTTGAAAAAGACGTAAATCCCGCGCGCGCGGATTGAGGTTCAAACCGGCATGTGCGTTCAAATGCTGGTTTGTGCACg > 6:543726/1‑140 (MQ=255)
tACTCTGGCGTTCGCCACGAGCAGTTTTTTCTTTGATGTTGAAAACTCT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCTCGCGGTTTGAGGATCAATCCGGCATGTGCGTTCAAATGCTGGTTTGTGAACGCa < 6:941744/140‑1 (MQ=255)
ctGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCAcc < 3:598528/138‑1 (MQ=255)
tGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGAAAACCCT‑GGCCCATTGATTGGGTAACAGACGGAAATCCCGCGCGCGCGGATTGAGGATCAATCCGGCATGTGCGGGGAAATGGTGGGTTGTGAACGCACCAAc > 8:412650/1‑140 (MQ=255)
ggcttgcGCTACGAGCCGTTTTATCTTTGATGTGGAAAACACT‑GGCCCATTTCTTGAGAAACAGACTTAAATCCAGCGAGCGCGGATTGAGTATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 2:846624/134‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 4:358168/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 3:285168/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 4:713740/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 7:392998/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 2:978738/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 7:622614/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACG‑GGCCCATTGAGTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGGTTGTGAACGCACCAACt < 6:418095/140‑1 (MQ=255)
ggCGGTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAACCACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAGTGAGGATCAATCCGGCAGGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 1:541646/140‑1 (MQ=255)
gCGTTCGCCACGAGCCGTGGTTTGTTTGATGTGGTAAACACA‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTGCGTTCAAATGCTGGTTTGTGAACGCACCAAc > 4:1103329/1‑138 (MQ=255)
gCGTGCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACtt < 1:840121/140‑1 (MQ=255)
ttCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAAACCT‑GGCCCATTGATTTAGAAACAGACGTAAATAAAGCGCGCGCGGGTTGAGGATCAATACGGCATGTCCGTTCAAATGATGGTTTGTGAACGCACCAACTTGtt > 8:736722/1‑140 (MQ=255)
tagcaaCGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTTAGAAACAGACGTAAATCCAGCGCGAGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGt < 4:792340/133‑1 (MQ=255)
gCCACGAGCCGTGTTTTCTTATATGTTGAAAAAACA‑GGCCCATTGATTGAGAAACAAACGAAAAAAAATCGCGCCCGGATTGAGGCTCAATACCGCATGTCCGTTGAAATTCTGGTTTGTGGAAGCACCCACATGTTGAt > 8:312468/1‑140 (MQ=255)
ccACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTTATg < 1:153902/140‑1 (MQ=255)
aataGCCTTGTTTTCTGTGATGTGGAAACCACT‑GGACCCTTGATTGAGAAACAGAAGTAAATCCAGCGCGCGAGGATTGAGGATCAATCAGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATg < 3:892229/135‑1 (MQ=255)
aCGAGCCGTGTTGTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATg < 4:620164/138‑1 (MQ=255)
aCGAGCCGTGGTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 2:1028296/140‑1 (MQ=255)
cGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGAc < 6:400147/140‑1 (MQ=255)
gttttgttttATGTGGAAAACACT‑GGCCCAATTATTGAGTAACAGACGTAAATACAGCGCGCGCGGATTGAGGATAAATACGGCAAGTCCGTTCAAATTCTTGTTTGTGTACGCACCAACTTGTTGATGGGCGTCGTAtt > 8:512232/1‑140 (MQ=255)
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CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTATT > NZ_CP022686/2394148‑2394425
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
