Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,633,846 |
T→G |
24.8% |
N253T (AAC→ACC) |
yqeB ← |
selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,633,846 | 0 | T | G | 24.8%
| 312.8
/ 59.7
| 242 | N253T (AAC→ACC) | yqeB | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| Reads supporting (aligned to +/- strand): ref base T (49/129); new base G (59/5); total (108/134) |
| Fisher's exact test for biased strand distribution p-value = 2.24e-20 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 245 total aligned reads displayed.
CACTTCCAACATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGGCGCAG > NZ_CP022686/1633707‑1633985
|
tCCAACATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGCAGGCTTCATCATCAACCCACCCGGCGCGTTAtt > 2:953864/1‑140 (MQ=255)
aaCATTATCACTTTAAAAACCACATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGAGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTAttttt < 7:105360/140‑1 (MQ=255)
aaCATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACACGGCGCGTTAttt < 4:1027049/138‑1 (MQ=255)
aaCATGATCACATTAAAACCCGCATGATACAGACGTAGCTCTCCACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTAttttt < 7:75359/140‑1 (MQ=255)
tGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCAcc < 6:134993/140‑1 (MQ=255)
tGATCACTTTAAAAACCGCATGATACAGTCGTAGCGCTACACCACTGGCGCTATCCCCCTCACCGCGAACCACCACCAGCTTGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCAcc < 5:363267/140‑1 (MQ=255)
cACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTAttgttgaacgg > 3:847655/1‑132 (MQ=255)
cccGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTGTTTTTAACCTGTAATATTTCt > 3:1043623/1‑138 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTc < 7:330608/120‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTc > 8:330608/1‑120 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGcc < 3:566932/138‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAg < 2:789713/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAg < 5:226054/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAg < 5:1120147/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAg < 2:355530/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTAACCTGTAATATTTATGCCac > 6:876049/1‑139 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTAAACTTTTAAATTTATGCCAg > 7:861377/1‑140 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCAGCACCGCGAATCACCACCAGCTGGTGTCAGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAg < 8:828413/140‑1 (MQ=255)
cagtGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAg < 5:145695/137‑1 (MQ=255)
aTGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAg < 3:915769/138‑1 (MQ=255)
aTGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCa < 8:1016708/140‑1 (MQ=255)
aTACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCAc < 4:348374/138‑1 (MQ=255)
tACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑t < 6:1077127/140‑1 (MQ=255)
cAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑Taa < 7:131563/140‑1 (MQ=255)
cAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑Taa < 7:57005/140‑1 (MQ=255)
cAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTCACCGGTAATATTTATGGCAGCACGC‑Taa > 6:828752/1‑140 (MQ=255)
aCGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTAATTTTAACCTGTAATATTTATGGCAGCACGC‑GAATgg > 1:1312498/1‑140 (MQ=255)
aCGTAGCGCTACACCACTGGCGATATCCCCCGAACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCCCCCGGCGCGTTTTGTTTGTCCAGGAATATTTGTGACAGCACGC‑Taaaag > 2:851031/1‑137 (MQ=255)
gTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTGAATTTTATCCAGGAAAATTTCTTACACCACCC‑CAATgg > 3:1177568/1‑138 (MQ=255)
gTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTAGCAGGTATTATTTTTGCCAGCCCGC‑TAAttg > 4:194624/1‑136 (MQ=255)
tAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTGACCTGTAATATTTCTGCCAGCACGC‑TAATGGCgg > 2:981650/1‑139 (MQ=255)
tAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGGTTTTTTTAACAGTAATATTTATTCCAGCACCC‑TAAttggtt > 6:145695/1‑135 (MQ=255)
aGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGAt < 2:563263/140‑1 (MQ=255)
aGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGAt < 1:882186/140‑1 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCACCCCACCCGGCGCGGGATTTTTGCCCGGTAATATTTGAGCCAGCCCGC‑AATTggggctc > 7:81355/1‑135 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCCCCCGGCGCGTGATTTTTGACCGGTTATATTTATGACCGCCCGC‑GAATgggggtc > 7:370344/1‑135 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTTTTTTTGACCTGTTATATTTATGCCAGCACGC‑GAAAGGCGAtc > 7:482099/1‑140 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTTTTTTTCACCTGTAATATTTCTGCCAGCAAGC‑TAATGGGGAtc > 8:802459/1‑140 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTGACCAGTTATAATTCTTCCAGACCGCATAATgggaga > 5:89583/1‑136 (MQ=255)
cgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTCACCTGTAATATTTATGCCAGCACGC‑TAATGGGGaa > 4:1039222/1‑137 (MQ=255)
gcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGGTTTTTTAAACTGGTATATTTATGCCCGCCCGC‑TAATGGGGAta > 3:877791/1‑137 (MQ=255)
caccacTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTTTTTTTAACCTGTAATATTTATGGCAGCCCCC‑GAATGGCGATCACCAgc > 6:107361/1‑140 (MQ=255)
ccacTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTATGCCAGCACGC‑TAATGGCGAGATCCTgc > 4:558424/1‑138 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCCCCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGGTTTTTTTACCGGGAATAATTTTGACACCACCG‑GACTAGCGAGATCCTgcggggg > 1:1083914/1‑137 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTGACCTGTAATATTTAGGCCCGCACGC‑TAATGGCGATCTCCAgcggcgg > 2:1092782/1‑139 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTTTTTTTAACCTGTAATATTTATTCCAGCACCC‑GAAATGCGATCACCAgcggcgg > 8:57591/1‑139 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTAACCTGTAATATTTATGCCAGCACGC‑TAAATGCGATCACCAGCGGCGt > 6:999231/1‑140 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCAACCCGGCGCGGTATTTTTGAACTGGAATATTTATGACAGCCCGC‑TAATGGCGCTCACCGgaggcgg > 2:544406/1‑139 (MQ=255)
ggCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTGACCTGGTATATTTCTTCCAGCCCGC‑TAATGGCTATCTCCAgcggcgg > 4:506742/1‑137 (MQ=255)
ggCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCACGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGt > 4:805872/1‑138 (MQ=255)
gCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTc < 1:699205/140‑1 (MQ=255)
gCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTc < 2:1376621/140‑1 (MQ=255)
gCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTc < 6:431983/140‑1 (MQ=255)
gCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTc < 1:558865/140‑1 (MQ=255)
gCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACACGGAGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTc < 5:521426/140‑1 (MQ=255)
gCGATATCCCCCGCAACGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGtt < 3:503755/138‑1 (MQ=255)
gATCTCCCCCGCACCGCGCATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCCGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCg < 2:1231445/140‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCCCCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCg < 8:26216/140‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGACGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTGATTTTTCACCTGTAATCTTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCg < 8:941276/140‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGCAGGCTTCATCATCAACCCACCAGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGTCGATCTCCTGCGGCGTTTc < 4:25298/138‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCTGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCg < 6:962677/140‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTc < 3:1132360/138‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCg < 1:639723/140‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTGCATCATCAACCCACACGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCg < 6:719589/140‑1 (MQ=255)
atCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTTTTTTTAACCTGTAATATTTCTGGCCGCACGC‑TAATGGCGATCTCCTGCGGCGGTTACGccc > 8:895899/1‑138 (MQ=255)
atCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTAACCGGGAATATTTGTGCCAGCCCGC‑AAATAGCGCTCAACGGCGGCGTTTACGGAc > 6:1125544/1‑140 (MQ=255)
cccccGCACCGCGAATCCCCACCAGCTGGTGTCCGGAAGGATGAGCAGGCATCAGCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATATCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCt < 8:1143435/140‑1 (MQ=255)
cccccGCACCGCGAAGCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCt < 1:98155/140‑1 (MQ=255)
cccccGCACCGCGAAGCACCACCAGCTGGAGGCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCt < 2:1216270/140‑1 (MQ=255)
cccccGCAACGCGTATCCCCAACAGCTTTGTTGCGGTAGGATGTGAATGAGTCATAATCAACCCAACCGGCGCGTTATTTTTCAACTTTAATTTTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCAGCt < 2:315257/140‑1 (MQ=255)
ccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTa < 4:598509/138‑1 (MQ=255)
ccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTAtg < 5:497170/140‑1 (MQ=255)
ccGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTa < 7:266563/140‑1 (MQ=255)
ccGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTa < 8:1179164/140‑1 (MQ=255)
cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTAACCTGTAATATTTATGCCAGCACGC‑GAATTGCGATCTCCTGCGGGGTTTACGCCCCTATGTTGTaa > 4:1293228/1‑138 (MQ=255)
cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTTTTTTTTAACAGTAATATTTATGCCAGCCCGC‑TAATGGGGGTATCCAGCGGCGTTTACGCCCCTAtgttttta > 3:678431/1‑134 (MQ=255)
aaTCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTAACCAGTAATATTTATGCCAGCACGC‑TAAAGGGGATCACCAGCGGCGGTTACGCACCCATTTTTTaaac > 4:551615/1‑136 (MQ=255)
accaccAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACggg < 7:910500/140‑1 (MQ=255)
caccaGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGgcg < 8:418261/140‑1 (MQ=255)
caccaGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTAACCTGTAATATTTATGCCAGCCCCC‑TAATGGCGATCTCCAGCGGCGGTTACCCACCAATTTTGTAACCAACcgggg > 1:31370/1‑138 (MQ=255)
tGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTAACCAGTAATATTTATGGCAGCACGC‑GTATGGCGATCACCAGCGGCCGTTCCGCCCCAATGTTTGAAACCACGGGCGCATGt > 3:1288873/1‑138 (MQ=255)
tCCGGAAGGATGAGAAGTCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACggg < 2:1369020/140‑1 (MQ=255)
tCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTTATAATTCTGGCCGCACCC‑TAATGGCGATCTCCTGCGGCCTTTCCGCCCCTATGTTGTAACAAAAGGGCGCAAGTAAACg > 3:738311/1‑138 (MQ=255)
tCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATGTTTCTCCTGTAATATTTCTGCCAGCTCGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACggg < 5:635308/140‑1 (MQ=255)
cGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACggg < 4:144960/138‑1 (MQ=255)
cGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACggg < 3:281217/138‑1 (MQ=255)
gAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCa < 3:1332221/138‑1 (MQ=255)
aaGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAata < 6:1210409/140‑1 (MQ=255)
ggATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATg < 1:142178/140‑1 (MQ=255)
ggATGAGAAGGCTTCATCATCAACCCACCCGGCGAGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATg < 6:296193/140‑1 (MQ=255)
tGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGt < 4:690262/138‑1 (MQ=255)
tGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTGACCGGTAATATTTATGCCCCCACGC‑CAAAGGCGCTGTCCTGCGGCGTTTACGCCCCAATTTTTTTACCAACGGGCGCATGTTAACGGGCAATAttttt > 1:35795/1‑139 (MQ=255)
gagaAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGttct < 2:401546/140‑1 (MQ=255)
agaAGGCTTCATCATCAACCCACCCGGCGCGGTATTTTTAACCAGTAATATTTCTTCCACCACCC‑AAAATGCGCAATCCTTCGGCCTTTGCCCACCAATGTTGTAAACAAAGGGCGCGAGTAAAACGGCAATAtttta > 4:886893/1‑137 (MQ=255)
ggCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCa < 3:399277/138‑1 (MQ=255)
ggCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGc < 1:926358/140‑1 (MQ=255)
ttCATCATCAACCCACCCGGCGCGTTATTTTTCACCAGTAATATTTATTCCAGCACGC‑AAATGGCGATCTACTGCCGCGTTTCCGCACCTATGTTGTAACCAACCGGCGCAAGTAAACGGGGAATATGTTCTTCATCCAc > 2:1114907/1‑140 (MQ=255)
cccacccGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCAc < 1:540861/140‑1 (MQ=255)
cgcgTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTGCTTCAGCCACGCCTTTCTCACGCAATTg < 4:947895/138‑1 (MQ=255)
ttATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGGCGCAg < 5:856139/140‑1 (MQ=255)
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CACTTCCAACATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGC‑TAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGGCGCAG > NZ_CP022686/1633707‑1633985
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
