Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,633,846 |
T→G |
26.8% |
N253T (AAC→ACC) |
yqeB ← |
selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,633,846 | 0 | T | G | 26.8%
| 192.3
/ 44.8
| 168 | N253T (AAC→ACC) | yqeB | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| Reads supporting (aligned to +/- strand): ref base T (41/79); new base G (45/2); total (87/81) |
| Fisher's exact test for biased strand distribution p-value = 4.23e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 169 total aligned reads displayed.
CTTCCAACATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGGC > NZ_CP022686/1633709‑1633981
|
cTTCCAACATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTa < 7:361636/140‑1 (MQ=255)
aaCATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTAttttt < 3:405456/140‑1 (MQ=255)
aaCAAGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGGCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTAttt < 6:518772/138‑1 (MQ=255)
aTGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTACGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCAc < 8:926398/140‑1 (MQ=255)
tGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCAcc < 4:306845/140‑1 (MQ=255)
cTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCCCCCGGCGC‑GGTATTTTTGACCTGTAat > 2:1109792/1‑140 (MQ=255)
tttAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCTAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTAACCTGGAata > 2:159001/1‑140 (MQ=255)
tAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATAtt > 3:455618/1‑140 (MQ=255)
tAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTAACCTGTAATAtt > 4:919713/1‑140 (MQ=255)
gCATGATACAGACGTAGCTCTACACCACTGGCGATATCACCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAg < 8:842099/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCTGCTGGTGTCAGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAg < 8:1019287/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCCGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGGTTTTTTTAACTGTGATAtttaatacac > 7:600059/1‑133 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGTTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGcc < 6:165329/138‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGACGGATGAGAAGGCTTCATCATCAACCCACCCGGCGCGGTTATTTTTCA‑CTGGTATATTTATGACAg > 7:600057/1‑140 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAg < 1:799132/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAg < 8:482232/140‑1 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTAACCTTTAAAATTTATTCCac > 2:231786/1‑139 (MQ=255)
gCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTATTGAACGGTAATAtttattacac > 1:1069116/1‑133 (MQ=255)
gCATGATACAGACGTAGCGCTACACAACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGATTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAg < 2:402879/140‑1 (MQ=255)
aTGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTTAACTGTTATATTTATTCCAg > 5:80165/1‑138 (MQ=255)
aTGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTACCCGGTAATAATTATGcccc > 5:114499/1‑136 (MQ=255)
cAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTaa < 7:315490/140‑1 (MQ=255)
gTAGCGCTACACCAGTGGCTTTATCCCCCGCACCGCGAATCACCACCAGCTTGTGTCCTGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTTATATTTCTGCCAGCACGCTAATGGCg < 3:873019/140‑1 (MQ=255)
gTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAATGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCg < 4:922105/140‑1 (MQ=255)
gTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCCCCCGGCGC‑GGTTTTTTTAACCAGTAATATTTTATGCACCACGCGAATgg > 6:6134/1‑138 (MQ=255)
gTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCg < 4:17789/140‑1 (MQ=255)
tAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCAGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTAAACTGTAATATTTTTGCCCGCAAGCGAATGGCgg > 7:470913/1‑139 (MQ=255)
aGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGAt < 4:455618/140‑1 (MQ=255)
gcgcTACACCACTGGCGCATTCCCCCGCACCTCGAATCACCACCAGCTGGTGTCATGAAGGATGAGAAGGCTTCATCATCAAACAACCCGCCCC‑GGAACTTTTCACCAGGAATATTTATGCCAGCAAGAGATTGGCGaac > 8:247928/1‑138 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCCACCCACCCGGCGC‑GTTATTTTTGACCGGTAATATTTGTGCCCGCACGCGAATTGCGAtg > 7:358359/1‑139 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTATCCCCTAAAAATTATGACAGCACGCGAAttgacata > 3:588131/1‑133 (MQ=255)
gcgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTAATTTTAACCAGGAATAATTATGGCCGCCCGCGAAAGGGGaag > 4:1134649/1‑138 (MQ=255)
gcgcTACACCACTGACGATATCCACCGCACCGCGAATCACCACCAGATGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTCAACACTAATATTTATTCCAGCCCACTAATTTCGAtc > 2:16156/1‑140 (MQ=255)
cgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTTTTTTTTACCGGTTATATTTTTGGCAGCACGCGAAAGGGGAt > 5:491653/1‑138 (MQ=255)
cgcTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTTTTTTTGAACCGTTATATTTATGCCCGCACGCAAATGGCgcact > 1:512940/1‑136 (MQ=255)
cTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCAACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGAtct < 6:797938/138‑1 (MQ=255)
acacCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCCCCCGGCGC‑GTTTTTTTTTACCAGGAATATTTGTGCCCGCACGCGAATTGCGATCTCCTg > 3:750119/1‑140 (MQ=255)
acacCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTAACCTGTATTATTTATGCCAGCCCGGTAATGGCGATATCCTg > 2:1151360/1‑140 (MQ=255)
acacCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTg > 8:337127/1‑140 (MQ=255)
caccacTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTTTTTTTAACCTGTAATATTTATGGCAGCCCGCTAATTGGGCTCTCCTgc > 4:566842/1‑140 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCCGCTGGTGTCCGGAAGGATGAGAAGGCTTCTTCATCACCCCACCCGGCGC‑GTTTTTTTTACCAGGTTATATTTATTCCAGCACCCGAATGGCGAAATCCTgcggcgg > 8:175518/1‑139 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTCAACTGTAATATTTATTCCAGCACGCGAAAGGGGATATACTgcggcgg > 3:256496/1‑139 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTGACCAGTTATATTTATTCCAGCACGCGAATGGCGCTATCCTgcggcgg > 2:413280/1‑139 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTAATTTTACCCTGTAATATTTCTTGCAGCACGCGAAAGGAGCTCGCCGGGGGCGt > 8:798503/1‑140 (MQ=255)
cTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGGTTTTTTTACCTGTAATATTTGTTCCCGCCCGCGAATTGCGATCGCCAgcggggg > 1:652427/1‑137 (MQ=255)
tGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGTAAGGATGAGAAGGCTTCATCATAAACCCACCCGGCGC‑GTTCTTTTTATCCTGTAAGATTTATTCCAGGCAGCTAATTGGGTTCTCCGGCGGCGtt > 3:649861/1‑140 (MQ=255)
ggCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCCCCCGGCGC‑GGTTTTTTTAAACTGTAATATTTGTGCCAGCAAGCTAATTGCGATAGCCTgcggcgg > 6:1121202/1‑137 (MQ=255)
ggCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAAAATTTATGCCACCACGCAAATGGCGATCTCCTGCGGCGt > 6:307809/1‑138 (MQ=255)
tatatCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTc < 6:490818/137‑1 (MQ=255)
gATATCCCCCTGACCGCGAAGCACCACCAGCTGGTGGCCGGAAGGATGAGAAGGCTTCATCATCAACCCCACCGTCGC‑GTTATTTTTCAACTGTAATATTTCTGCCAGCCCGCTACTGGCGATCTCCTGCGGCGTTTCCg < 7:252876/140‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGCAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTc < 6:660483/138‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTAACCGGTAATATTTTTTGCAGCCCGCGAATGGCGATCTACTGCGGCGgtta > 5:268970/1‑137 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCg < 1:1004139/140‑1 (MQ=255)
gATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCGAATGGCGATCTCCTGCGGCGttta > 6:367232/1‑137 (MQ=255)
acccccGCACCGCGAATCACCACCAGCTGGTGTCCGTAAGGATGAGAAGTCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCa < 6:635569/137‑1 (MQ=255)
cccccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCt < 8:511791/140‑1 (MQ=255)
cccccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCt < 1:852834/140‑1 (MQ=255)
ccccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCCCCCGGCGC‑GTTATTTTTCACCAGGAATATTTCTGCCAGCACGCTAATGGCGATATCCAGCGGCGTTTCCGCCCCTa > 8:520532/1‑140 (MQ=255)
ccccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTTTTTTTAACCTGTAATAATTGTGCCAGCACGCTAATGGGGATCGCCTGCGGCGTTTACGCCCCTa > 2:850817/1‑140 (MQ=255)
cGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTCACCTGTAATATTTCTGCCCGCACGCTAATGGCGATCTCCAGCGGCGTTTCCGCCCCTAttt > 4:901608/1‑138 (MQ=255)
gcgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTTTTTTTGACCGGTTTTTTTTATTAGCCCACGCAGATGGCGCTCGACAGCGGCGGTTTCGGCCCAATGTTGTaaa > 1:325376/1‑139 (MQ=255)
cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTGACCGGTTATATTTATGGCCGCCCCCGAATTGCGATCTCCAGCGGCGGTTGCGCACCTATGTTGTATcc > 8:577845/1‑140 (MQ=255)
cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTGAACTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGGTTCCGCACCTATTTTGTTAcc > 2:717550/1‑140 (MQ=255)
cccctcaGCTGGTGTCCGGAAGGATGAGAAGTCTTCATCATCAACCCACCCGGCTC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACATATGTTGTAACCAACggg < 4:802780/135‑1 (MQ=255)
cccacccGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGGTTCCGCACCTATGTTGTAACCAACggg < 4:450119/139‑1 (MQ=255)
accaccAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACggg < 3:844754/140‑1 (MQ=255)
accaccAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGGTTCCGCACCTATGTTGTAACCAACggg < 2:685304/140‑1 (MQ=255)
accaccAGCTGGTGTCCAGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACggg < 4:996349/140‑1 (MQ=255)
accaccAGATGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTAACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACggg < 1:475077/140‑1 (MQ=255)
caccaGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTAACCTGGAATATTTCTGCCAGCACGCGAATGGCGATCTCCTGCGGCGTTTCCGCCCCAATGTTGTAACCCACGGgcg > 3:692778/1‑140 (MQ=255)
gCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAAAGGCGATCTCCTGCGGCGTTTCCGCCCCTATGTTGTAACCAACGGGCGCATGt > 4:820069/1‑140 (MQ=255)
cTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCACCCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTTCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATg < 5:635542/138‑1 (MQ=255)
cTGGTGTCCGGAAGGATGAGAAGGCTACATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTa < 1:769113/140‑1 (MQ=255)
ggTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTaaa < 1:717550/140‑1 (MQ=255)
ggTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GGTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTaaa < 3:912069/140‑1 (MQ=255)
gtgtCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTaa < 6:193380/138‑1 (MQ=255)
gtgtCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAAc < 1:1009312/140‑1 (MQ=255)
tCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACggg < 1:1000275/140‑1 (MQ=255)
cGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTATTGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCa < 1:1142616/140‑1 (MQ=255)
ggATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTACTGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAata < 6:46884/138‑1 (MQ=255)
gATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTAACCAGTAATATTTATGCCAGCACGCTAATGGCGAGATACAGCGGCCTTTACGCACCTATGTTGTAACCAAAGGGCGCATGTAAACCGGCAaaattt > 4:768924/1‑138 (MQ=255)
gATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCAGTAATATTTCTGCCAGCACGCTAATGGCGCTCTCCTGCGGCGTTTCAGCACCTATGTTTTAACCAACCGGCCCATGTAAAAGGGCCATATGt > 8:354339/1‑140 (MQ=255)
gagaAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGtt < 6:249105/138‑1 (MQ=255)
agaAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGttctt < 3:27463/140‑1 (MQ=255)
aaGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCGGTAATATTTATGCCAGCCCGCTAATGGCGATCTCCTGCGGCGTTTTCGCACCTATGTTGTAACCAACGGGCGCATTTAAACGGGCAATATgttgtt > 6:926922/1‑138 (MQ=255)
gCTTCATCATCAACCCACCCGGCGC‑GTTTTTTTTCACCTGTAATATTTAAGCCAGCACGATAAAGGCGATCTCCTTAGGCGTTTCAGAACATATGTTTTAACCAACGGGGCCATTAAAACGAGAAATAAGTTCTTAAGcc > 4:70346/1‑140 (MQ=255)
cTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGc < 5:247036/138‑1 (MQ=255)
cTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCa < 8:178875/140‑1 (MQ=255)
cTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCa < 1:430254/140‑1 (MQ=255)
ttCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCAGTAATATTTAAGCCAGCCCGCTAATGGCGATCTCCAGCGGCGTTTCCGCACCTATGTTGTACCCAACGGGCGCATGTTACCGGGCAAAATGTTCTTACGCCAc > 8:658639/1‑140 (MQ=255)
ttCATCATCAACCCACCCGGCGC‑GTTATTTTTAACCAGTATTATTTATGCCCGCACGCGAATTGCGATCGCCTGGGGCGTTTCCGCCCCAATTTTTTAACCCACGGGCGCATGTTAAAGGGGAATATGTTATTAAGCCAc > 2:637961/1‑140 (MQ=255)
ttCATCATCAACCCACCCGGCGC‑GTTATTTTTAAACTGTAATATTTATGCCCGCACGCGAATGGCGATCTACTGCCGCGTTTACGGCCCATTGTTTTAACCAAAGGGCGCATGTTAACCGGCAATAAgttgttaaccccc > 4:152193/1‑133 (MQ=255)
ttCATCATCAACCCACCCGGCGC‑GGTATTTTTAACCTGTAATATTTGTGCCAGCACGCGAATGGCGATCTCCTGCGGCGTTTCCGCACCGATGTTGTAACCCCCGGGCGCATTGAAACGGGCCAAATGTTCTTCAGcccc > 4:692256/1‑138 (MQ=255)
ttCATCATCAACCCACCCGGCGC‑GGGTTTTTTGACCGGTAAAATTTAATCAACCACCCTAATGGCGCACTCCAGCGGCGTTTACGCACCTATTTTTTAAACCAAGGGCGCATGTAAAAGCGCAAAATATTTTTCAGCCAc > 2:574078/1‑140 (MQ=255)
acccacccGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCATCTCGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCa < 3:1135956/140‑1 (MQ=255)
acccacccGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTtct < 6:35908/138‑1 (MQ=255)
cccGGCGC‑GTTATTTTTCACCTGTAATATTTATGCCAGCACGCTAATGGGGATCTCCTGCGGCGTTTCCGCCCCTATTTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACgaca > 2:738020/1‑137 (MQ=255)
cccGGCGC‑GGTATTTTTCACCTGTAATATTTATGCCAGCACGCTAATGGCGATCTCCAGCGGCGTTTGCGCACCTATTTTTTAACCAACGGGCGCATGTATACGGGCAATATGTTGTTCAGCCACGCCTTTATAACCCaa > 2:754155/1‑140 (MQ=255)
gcgc‑GTTATTTTTAACCTGTAATATTTCTGCCAGCACGCAAATGGCGATATCCAGCGGCGTTTCCGCACCAATTTTGTAACCCACGGGCGCATGTAAAAGGGCAATATGTTCTTCAGCCCCGCCGTTATCACCCAATTgg > 7:897917/1‑140 (MQ=255)
cgc‑gTTATTTTTCACCAGTAATATTTATGCCAGCACCCTAATTTCGATCTCCTTCGGCGTTTACGCACCTATGTTTTAACCAACGGGCGCATGTAAACGGGCAATATTTTATTCAGCCACGCCGTTCTCACGCAATTGgc > 4:1014162/1‑140 (MQ=255)
|
CTTCCAACATGATCACTTTAAAACCCGCATGATACAGACGTAGCGCTACACCACTGGCGATATCCCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGCTTCATCATCAACCCACCCGGCGC‑GTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTAATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGGC > NZ_CP022686/1633709‑1633981
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
