Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,954,923 |
T→G |
19.1% |
T92P (ACG→CCG) |
ttdR ← |
DNA‑binding transcriptional activator TtdR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,954,923 | 0 | T | G | 19.1%
| 274.2
/ 24.2
| 172 | T92P (ACG→CCG) | ttdR | DNA‑binding transcriptional activator TtdR |
| Reads supporting (aligned to +/- strand): ref base T (30/106); new base G (34/2); total (64/108) |
| Fisher's exact test for biased strand distribution p-value = 6.07e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 176 total aligned reads displayed.
AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGT > NZ_CP022686/1954785‑1955058
|
tCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 4:686115/1‑138 (MQ=255)
tcgctcgaACAATTCAAAATGCACCTGTAAATCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCTATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCACTCCGGGCGCGTTTTTAttttag > 5:1058082/1‑137 (MQ=255)
tcgatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTCTTTGCg > 6:982951/1‑140 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGa > 5:394309/1‑140 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGa < 7:847498/140‑1 (MQ=255)
tcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGTATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGAc > 5:389368/1‑140 (MQ=255)
tCAAGATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAc < 5:247219/140‑1 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCg < 4:29201/138‑1 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCg < 3:393221/138‑1 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCg < 1:789060/138‑1 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAc < 6:695289/140‑1 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAc < 5:566420/140‑1 (MQ=255)
aaaaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCa < 7:39773/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAATCTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 3:557441/138‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 4:769705/138‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 3:686115/138‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 2:994353/138‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCg < 6:394309/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATAGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGAGCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCg < 5:421688/140‑1 (MQ=255)
tGCACCTGTAAATCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCg < 8:675258/140‑1 (MQ=255)
aCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACCTCATCGACCAGTCCCTg > 7:703522/1‑140 (MQ=255)
cTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTTCGTGACGTCATAGACCAATCGCTg > 3:473117/1‑138 (MQ=255)
gTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCTGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGat < 1:55316/138‑1 (MQ=255)
gTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGat < 1:313809/138‑1 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 5:990714/123‑1 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt > 6:990714/1‑123 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAg < 5:843802/140‑1 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGGGTGGCGTCCTAGCCCACTCGCGGATATTTGGTggt > 5:591814/1‑138 (MQ=255)
aaTTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAtt < 7:950251/140‑1 (MQ=255)
aaTTGCGCATCAGTTCGGTAATAGCTGGAGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAtt < 7:950245/140‑1 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTCGGGACGTCATCGACCCGTCGCTGGTTTTTGGGGTGGGTTTTCAg > 2:142127/1‑138 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGTCGTCATCGACCAGTCGCTGATATTGGGGGAGGGTTTGCAg > 2:53036/1‑138 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGAGGTCAACGACCACGCGCGGCTATTGGGGGAGGGTTTgcggcg > 7:109388/1‑140 (MQ=255)
acaggTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTCCAgc < 1:199838/134‑1 (MQ=255)
aTCAGTTCGGTAATATCTTGCGAAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGTGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 5:738166/140‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 8:275942/140‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 8:636717/140‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgc < 1:1000538/138‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCAGCGCCCAAAACCAAAACTGCAACCACTGCGGATCATCCCCTCCGGGAGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTCCAgcgc < 6:181/140‑1 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGAGTTTGGTTGCGTCATCGTCCAGTGGCGGATATTTGGTGTGGGTTTTCAgcg > 3:476414/1‑138 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGAATTGCCTGACCACCTCGAACAGACGCGCATATTTGGTGAAGATATACAgaa > 1:48118/1‑136 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGACCAGGGGCGGATATTGGGTGAGGGTTTCCAgcg > 3:993590/1‑138 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATg < 3:515838/138‑1 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGtt < 7:1006356/140‑1 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGtt < 7:718661/140‑1 (MQ=255)
cGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACAAATACGGATCATCCCCTCCGGGCGCGTTTTGATTTTCGTGACGTCAGCGCCCAGTCGCTGAATTTTGGTGAGGATTTCAAGCGACTGTTCg > 6:1018920/1‑140 (MQ=255)
gTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTTTTTGCGTGACCTCATGGACCACTAGCTGATATTAGGTTAGGTATTTCAGCGGAAGTTca > 1:115894/1‑137 (MQ=255)
tAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGGGGGTCGTCATCGACCAGTCGCGGTTATTGGGTGAGGGTTTACAGCGGCTGTTGGtta > 7:7464/1‑138 (MQ=255)
tAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGGGTCGTCATCGACCAGTAGCTGATATTGGGTGAGGATTTGCAGCGCAAGTTCGTaa > 6:55814/1‑140 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTaacaa < 1:731474/138‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACg < 7:652024/140‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTAATCGACCAGTAGCTGATATTGGGGGAGGCTTTCCAGCGCATGGTCGTAAAAACg > 8:1029221/1‑140 (MQ=255)
ctcAATATGGCGTCGCCCAAACCCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATAGTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 2:84467/136‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAACCATGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 2:497394/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTTCGTGACGTCCACGCCCATTCGCGGATTTTGGGGGAGGTTTTCCAGCGCCTGTTCGTTAAAACCCTg > 4:533294/1‑138 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 3:1112749/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 3:1112745/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 2:763554/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 1:834837/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 7:214034/140‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCAGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 7:395655/140‑1 (MQ=255)
cgcAATATGGCTGAGACCAAAACCAAAACTGCAAACAATTCGGATCATCCCCTCCGGGAGCGTTTTGATTTGCGTGACTTCATAGACCAGGCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAAAAACGCTg < 2:460146/138‑1 (MQ=255)
cgcAAGATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 8:347589/140‑1 (MQ=255)
gcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATAGACCAAGCGCGGATAATGGGGGTGGCTTTACCGCGCAGGTTCGTAACAACACTgg > 2:37931/1‑138 (MQ=255)
cAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGGGTGCCGTCATCGACCAGTCGCGGGTATTTGGGGGGGTTTTCCCTCGGATGTTCGTAAAAACGCTggg > 3:788212/1‑137 (MQ=255)
cAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTTCGTGACGTCATAGCCCAGTCGCTGATAATGGGTGTGGCTTTACAGGGCCTGGTGGTTACAACGCgggg > 2:962888/1‑137 (MQ=255)
cTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTtca < 1:259095/138‑1 (MQ=255)
cTGCGCACTAAACCAAAACTGCAACATATGTGGATCATCCCCTCCGGGCGAGTTTTGATTTTCGTGACGTCATCGACCAGTCGCTTATATTGGGTGATGATTTCCATCGTATGTTCTTAACAACGCTGGCCACTTtcagt < 8:273126/140‑1 (MQ=255)
gcgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGCGTGACGTCATCGACCAGTCGCTGATATTTGGGGGGGGTTTACAGCGCATGTTCGTAACAAACCGGGCCCCTTtgagt > 3:710134/1‑138 (MQ=255)
gcgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGCCCCGTCGGTGATATTGGGTGAGGTTTTACAGCGCATGTTCGTAACAACGCGGGCCCCTTtcagt > 4:404305/1‑138 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTCGTGAAGTCATCGACCAGTCGCGGATATTTGGTGAGGAATTACCGCGCATGTTCGTAACAAAGCTGGCCCCATtcagtcac > 7:327956/1‑139 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTAGTAACAAAGCGGGCCACTTtaagtaaa > 6:814318/1‑137 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTGGATGTTCGTGACGTAATCGACCAGGCGCTGATATTGGGTGAGGATTTCAAGCGCATGTTGGTAACAAACCTTGCCACATtgagtcag > 7:1031027/1‑140 (MQ=255)
cccAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGACCCGTCGCGGATATTGGGTGGGGTTTTGCAGCGCATGTTAGTAACAACGCGGGCCACTTtgagtcag > 3:691580/1‑138 (MQ=255)
ccaaaaccaaaaCTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAgcgc < 6:590708/140‑1 (MQ=255)
ccaaaaccaaaaCTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTAAgc < 2:320243/138‑1 (MQ=255)
cAACCAAAGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTCCAGCGCATGTTCGTAACAACGCGGGCCACTTTCAGTCAGCGCCACGCCGCgagcgga < 5:896621/140‑1 (MQ=255)
caCCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTGCGTGACGTCATCGACCAGTCGCTGATAATGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 2:644185/137‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 8:9518/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 8:195422/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 6:332589/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 5:798747/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 4:424363/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 1:942181/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 3:176780/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 4:1026380/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 4:872240/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGGTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 8:615642/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGGTGTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 6:674744/140‑1 (MQ=255)
aaCCAATGCGGATCATACCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 2:308369/138‑1 (MQ=255)
cAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGGCGCTGATATTGGGTGAGGAATTCCAGCGCATGTTCGTAACAACTCTGGCCCCTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 8:613293/140‑1 (MQ=255)
tGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATAGCCCAGTCGCTGATATTTGGTGAGGATTTACAGCGCATGGTCGTAACAACGCTGGCCACGTTCAGTCAGCGCCCCGCCGCGAGCGGAGCGGttg > 6:522285/1‑139 (MQ=255)
cGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTc < 4:940277/138‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 8:379017/140‑1 (MQ=255)
atcCCCTCCGGGCGCGTTTTGATTTTGGTGACGTCATCGCCCAGGCGCTGGTATTGGGTGAGGCTTTCCAGCGCCTGTTCGTAACAACGCTGGCCACGTTCAGTCAGCGCCACGCCGCGCGCGGAGCGGTTCAGCagagg > 6:409484/1‑139 (MQ=255)
tCCGGGCGCGTTTTGATTTGCGTGACGTCTGCGACCAGTCGCTGATATTGGGTGAGGTTTTCCATCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCTCGAGCGGAGCGGGTCAGCTGAGTTGTTGc < 5:504159/140‑1 (MQ=255)
ggCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCa < 2:731941/138‑1 (MQ=255)
ggcgTTTTGATTTGCGTGTCGTCATAGACCAGTCGCTGATATTGTGTGAGGATTTCCAGCGCATGTTCTTAACAACGCTGGCGACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCTGCGt < 7:522235/139‑1 (MQ=255)
cgcgTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGc < 1:1063447/138‑1 (MQ=255)
cgcgGTTTGATTTGCGTGACGTCATCGCCCAGTCGCTGATATTGGGTGAGGGTTTACAGCGCATGTTGGTAACAACGCTGGCCACATTCAGTCAGCGCCCCGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGc > 4:151956/1‑138 (MQ=255)
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AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGT > NZ_CP022686/1954785‑1955058
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
