Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F36 I0 R1
|
149 |
10545.8 |
7272710 |
98.3% |
7149073 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,954,923 |
T→G |
17.6% |
T92P (ACG→CCG) |
ttdR ← |
DNA‑binding transcriptional activator TtdR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,954,923 | 0 | T | G | 17.6%
| 220.9
/ 20.0
| 139 | T92P (ACG→CCG) | ttdR | DNA‑binding transcriptional activator TtdR |
| Reads supporting (aligned to +/- strand): ref base T (38/72); new base G (25/2); total (64/75) |
| Fisher's exact test for biased strand distribution p-value = 2.78e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 148 total aligned reads displayed.
AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCC > NZ_CP022686/1954785‑1955053
|
aaTCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 5:399507/1‑140 (MQ=255)
aaTCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 6:600715/1‑140 (MQ=255)
tCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 7:7577/1‑138 (MQ=255)
tCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 7:427848/1‑138 (MQ=255)
tCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 4:7140/1‑138 (MQ=255)
tCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 4:70324/1‑138 (MQ=255)
aTTTGTCGATCGAACAATTCAAACTGCACCTGTATCTCAGGATAATTGAGCATCAGTTCGGTAATAGCTGGCGCAATATGGATGCGCCCAAAACCACAACTGCAACCAATGCGGATCATCCCCTCCGGGGGCGttttttt > 5:679458/1‑137 (MQ=255)
aTTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAAACAAAACTGCAACCAATGCGGATCATCACCTCCGGGCGCGTTTTg < 8:259374/138‑1 (MQ=255)
ttGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTTGCGCAATATGGCTGCGCCCAAAACCAAAACTGCACCCAATGCGGATCATCCCCTCCGGGAGCGTTTTTAt > 8:125585/1‑138 (MQ=255)
ttGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGGTTGAt > 1:301638/1‑138 (MQ=255)
gatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCg < 2:545531/138‑1 (MQ=255)
gatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTg < 5:470569/140‑1 (MQ=255)
gatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGAGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCg < 7:584835/138‑1 (MQ=255)
gatcgaACAATTCAAAATGCACCTGTAACTCAGGAGACTTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTg < 5:813895/140‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGt < 3:621449/138‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGt < 2:705773/138‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTGCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGt < 1:29713/138‑1 (MQ=255)
aaacTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCATAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAc < 4:238218/138‑1 (MQ=255)
aaaaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCa < 5:702625/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCa < 3:271202/138‑1 (MQ=255)
cTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTTCGTGACGTCATCGACCAGTCGCTg > 7:497637/1‑138 (MQ=255)
tGTAACTCAGGATACTTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGCGTGACGTCATCGACCAGTCGCTGata < 5:741111/140‑1 (MQ=255)
tGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGa < 7:627221/138‑1 (MQ=255)
gTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGatat < 6:13618/140‑1 (MQ=255)
cTCAGGATAATTTCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTggg < 5:275075/140‑1 (MQ=255)
cTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTggg < 5:275072/140‑1 (MQ=255)
cAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTggg < 8:42417/138‑1 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAg < 5:329875/140‑1 (MQ=255)
gATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGa < 3:8896/138‑1 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGTTTTGCGTGACGTCATAGACCAGTGGCGGATATTTGGGGAg > 1:680971/1‑138 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTTGGTGGCGTCAAAGACCAGTCGCTGATATTTGGTgtg > 1:103165/1‑136 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAtt < 4:464824/138‑1 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAtt < 2:418459/138‑1 (MQ=255)
ttGCGCATCAGTTCGGTAATAGATGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAtt < 2:501522/138‑1 (MQ=255)
gcgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCGTCGACCACTCGCTGAGATTTGGTGAGGAattg > 8:831843/1‑137 (MQ=255)
gcgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTc > 8:352391/1‑138 (MQ=255)
cgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTGCGTGACGTCATAGACCAGTCGCTGATATTGGGTGGGGATTTcc > 4:832863/1‑138 (MQ=255)
cgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAg > 6:794884/1‑140 (MQ=255)
cgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTCTTTGAGAGACGTAATAGACCAGTCGGAGTTATTGGGTGAGGATTTcc > 2:579927/1‑138 (MQ=255)
cgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTTAGTGACCTCAACGACCAGACGCGGATAATTGGTGTGGGtttaaag > 6:697050/1‑136 (MQ=255)
cgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGGGTGACGGAAACGCCCAGAGGCTGGTATTTGGTGAGGGtttac > 1:122588/1‑136 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCACCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGTATTGCGTGTCGTCAGCGACCAGTCGCGGAAATTTGGTGAGGATTTACAg > 4:195348/1‑138 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTGGTGCCGTCATCGCCCAGACGCTGAGTTTTGGGGAGGGTTTCCAgcc > 5:554230/1‑139 (MQ=255)
cATCAGTTCGGTAATAGCTGGAGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTATTTTCGGTCCGTCATAGACCAGAGGCTTGAATTTTGTGAGGAtttaaaccc > 5:751794/1‑134 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgc < 3:461895/138‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgc < 1:451432/138‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgc < 7:355992/138‑1 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTGTTTGCGTGACGAAATCGACCAGGAGCTGAGATTTGGTGAGGATTTCCCgcc > 8:111111/1‑137 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTTGGTGACCTAATCGACCAGTCGCTGATTTTTGGTGAGGGTTTACAgcg > 4:9736/1‑138 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTATTTGCGTGACGTCATCGACCAGTCGCAGATATTGGGTGAGGATTTACAgcg > 4:788702/1‑138 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATg < 8:295240/138‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTCCAGCGCATGTTCGTaacaacc > 6:288164/1‑139 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTGTTTGCGTGACGTCATCGACCAGTCGCTGATATTTGGTGAGGATTTCCCGCGCATGTTCGTaacaacc > 4:520329/1‑137 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGCCGTCATCGACCAGTCGCGGATATTGGGGGAGGATTTCCAGCGCATGTTCGTAACAACg > 4:908503/1‑138 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 4:806266/94‑1 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt > 3:806266/1‑94 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCGGATATTGGGTGTGGATTTGCCGCGCATGTTAGTaacaacc > 2:745129/1‑137 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTATTTGGGTGGCGTCCTCTACCAGGCGCTGATATTTGGTGAGGATTTACCGCGCAAGTTAGTtacaacc > 2:48454/1‑137 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGCGGGTCGGGATCGTCCAGTCGCTGGTTTTGGGTGTGGAGTTGCAGCGGATGTTAGTtaaaacc > 1:247410/1‑137 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGGGGGACGTCATCGACCAGTCGCGGATATTTGGTGGGGTTTTGCAGCGCATGGTGGTaacaacc > 7:541171/1‑137 (MQ=255)
ctcAATATGTCTGCGCACAAAACCAAAACTGCAACCAATGCGGATCATCCCCTACGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGATGATATTGGGTGAGGATTTACAGCGCATGTTCGTAACAACTCTg < 2:103200/136‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 2:411136/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 7:281997/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 6:360407/140‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGGGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 8:454603/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGCCCCGTCGCGGATTTTGGGTGAGGATTTCCAGCCGATGTTCGTAAAAACGCTg > 8:380198/1‑138 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGAACATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGCCCCGGCGCGGATATTTGGGGAGGGTTTACAGCGCATGTTGGGaacaacccaggg > 5:832772/1‑134 (MQ=255)
cgcAATATGGCGGCGCCCAAAACCAAACCTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGGCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 8:790324/138‑1 (MQ=255)
cAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGGGACGTCATCGACCAGTCGCGGATATTGGGTGTGGTTTTCCAGCGCAAGTTCGTAACAACGCAggg > 1:851408/1‑137 (MQ=255)
cAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGGGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGCTTTCCAGCGCATGTTCGTAACAACGCTGGc > 4:322841/1‑138 (MQ=255)
tatGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTATTTGGGTGGCGGGCTCGACCAGTCGCTGGTATTTGGTGGTGCTTTGAAGCGCATTTTCGGTAAAACGCGGGGCAcag > 5:315432/1‑138 (MQ=255)
cccAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTTCGTTACCTCAAAGACCACTCGCATGTAATTGTTGAAGATTTACAGCGCATGTTAGTAACAACCCTGGCCACTTTAAGTCAgcg > 6:727625/1‑140 (MQ=255)
cccAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGGGTGCCGTCATCGCCCAGTCGCGGATATTGGGGGTGGGTTTGCAGCGCATGGTCGTTACAACGCTGGCCCCGTtaagtcac > 2:335546/1‑137 (MQ=255)
cccAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTTCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTACAGCGCCTGTTCGTAACAACCCAGGCCCCATTCAGTCAgcc > 6:644649/1‑139 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTCGTGACGTCATAGACCAGTCGCTGATATTGGGGGAGGATTTACAGCGCATTTTCGTAACAACGCTGGCCACTTTAAGTCAccg > 2:874824/1‑138 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGCCCAGTCGCTGATATTGGGGGAGGATTTCCAGCGCATGTTCGTAACAACGCGGGCCACATTCAGTCAgcg > 7:568692/1‑138 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATg > 2:273787/1‑106 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATAGACCAGTCGCGGATATTGGGGGTGGTTTTACAGCGGATGTTGGTAAAAACGCTGGCCCCGTTGAGTCAgcc > 2:803577/1‑137 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATACCCCCGTCGCTGATTTTGGGTGATGATTTACAGCGCATCTTCGTAAAAACGCAGGCCAATTTCAGTCAgcc > 8:226945/1‑137 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCCTCGACCAGTCGCTGATATTGGGTGGGGATTTACAGCGCATGTTAGTAAAAACGCTGGGCCCTTTGAGTCAgcc > 3:82930/1‑137 (MQ=255)
aaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGcc < 3:7140/138‑1 (MQ=255)
accaaaacTGCAACCAATGCGGATCATCCCCTCCGTGCGCGTTTTTATTTTGGTGGCGTCATAGCACAGTCGCTGATAATGGGGGAGGATTTCACTCGCATTTTCGTAACAAAGCTGGACACTTTCAGTCCGCGcccc > 1:500092/1‑136 (MQ=255)
aaccTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGGCGGGCCTCAACGACCCGGCGGGGGGATTGGGTGAGGATTTACCGCGCACTGTCGTAAAAACGCAGGGCACGGTCAGTCACGGCCCcgcccgc > 6:140980/4‑137 (MQ=255)
aaCCTATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGAGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 2:913842/138‑1 (MQ=255)
aaCCCATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 4:295527/138‑1 (MQ=255)
aaCCACTGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 3:511435/138‑1 (MQ=255)
aaCCACTGCGGAGGATCCCCTCCGGTCGCGAGTTTATTTGCGATAGGTCAGCGACCAGTCGCTGATATAGGGGGAGGATTTCCAGCGCTTGTTCGTAACAACGCTGGCCACTTTCAGTCAGAGCCACGCCGCgagcgg < 2:149152/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCGGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 4:143707/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCTCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 8:742513/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 7:745366/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAGTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 4:39647/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGGCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 5:542695/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGAATTGCGTGACGTCATCGACCAGTCGCTTATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 8:670644/138‑1 (MQ=255)
aTGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 3:166706/138‑1 (MQ=255)
cGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGGGACGTCATCGACCAGTCGCTGATTTTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTc < 8:465336/138‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 2:811214/138‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 4:388710/138‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 3:127296/138‑1 (MQ=255)
atcCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATAATGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCaga < 4:903599/138‑1 (MQ=255)
gggCGCGTTTTGATTTGCGTGGCGTCATCGACCCGTCGCTGATATTGGGGGAGGTTTTCCAGCGGCTGTTCGTAAAAACGCGGGCCCCGTTGCGGCAGCGCCCCGCCGCGAGCGGCGCGGGTGCGCAGCGttgttggc > 4:794417/1‑136 (MQ=255)
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AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCC > NZ_CP022686/1954785‑1955053
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
