Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,954,923 |
T→G |
20.4% |
T92P (ACG→CCG) |
ttdR ← |
DNA‑binding transcriptional activator TtdR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,954,923 | 0 | T | G | 20.4%
| 256.4
/ 32.1
| 180 | T92P (ACG→CCG) | ttdR | DNA‑binding transcriptional activator TtdR |
| Reads supporting (aligned to +/- strand): ref base T (40/100); new base G (37/3); total (77/103) |
| Fisher's exact test for biased strand distribution p-value = 1.29e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 187 total aligned reads displayed.
AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGTATTT > NZ_CP022686/1954785‑1955062
|
aaTCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCTGGCGCGtt > 8:692798/1‑140 (MQ=255)
aaTCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGTCGCGtt > 1:978593/1‑140 (MQ=255)
aaTCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 2:401405/1‑140 (MQ=255)
aTTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGttttttt > 8:289087/1‑137 (MQ=255)
aTTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATAGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGAt > 1:18048/1‑140 (MQ=255)
tGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGAtt > 6:92315/1‑138 (MQ=255)
tGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGAtt > 6:92310/1‑138 (MQ=255)
tGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTg < 4:1168659/140‑1 (MQ=255)
tGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTg > 7:410168/1‑140 (MQ=255)
tcgatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTggg > 2:659163/1‑138 (MQ=255)
tcgatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTg < 5:244895/138‑1 (MQ=255)
tcgatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGGTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAACACCAAAACTGCAACCAATGCGGAGCATCCCCTCCGGGCGCGTTTTGATTTGCg > 7:770683/1‑140 (MQ=255)
catcgaACACTTCAAAAGGCTGCTGTCCCTCAGGATAATTGCGCAGCAGTTCGGTCTTAGCTGGCGCTATATGGCTGCGCCCTAAAACAAAACTGCAACCTATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTg < 4:319515/139‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGa < 3:1046475/140‑1 (MQ=255)
atcgaAAAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGa < 2:893746/140‑1 (MQ=255)
tcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGTTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGCGTg > 6:1137587/1‑138 (MQ=255)
cgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGa > 5:940204/1‑138 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAc < 3:1003935/140‑1 (MQ=255)
cAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAcc < 4:788270/140‑1 (MQ=255)
aaaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTCATAGCTGGCGCAATATGGCTGCGCCCAAACCCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAg < 3:333544/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 2:666961/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGATCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 2:368649/140‑1 (MQ=255)
tGCACCTGTAACTCATGATTATTGCGGATAAGTTCGGTAATAGCTGGCGCAATATGGCTGCTCCCAAAACCAAAACTGCAACCAATGCGGAGCATGCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGACCAGTct < 8:799247/140‑2 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCg < 1:320045/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTGCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCACCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCg < 7:905965/140‑1 (MQ=255)
aCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGCCCAGTCGCTg > 4:925108/1‑140 (MQ=255)
tGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGata < 2:1264884/140‑1 (MQ=255)
tAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTTCGTGACGGAATAGCCCAGTAGCGGATAtt > 3:339455/1‑140 (MQ=255)
cTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTggg < 7:138657/140‑1 (MQ=255)
cAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTggg < 5:1162387/138‑1 (MQ=255)
cAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTggg < 5:642224/138‑1 (MQ=255)
cAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTg < 1:509094/140‑1 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGCGTGTAGTAATCGGCCAGTCGCGGATATTGGGTGAg > 1:405265/1‑140 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGCCCAGTCGCGGAGATTGGGGGAg > 2:1131491/1‑140 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAAATGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGGTTTTCGTGACGTCATAGACCAGTGGCGTATATTTGGTGAg > 1:651321/1‑140 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCCACCAATGCGGATCATCCCCTCCGGGCGCGGGTTGTTTTTCGTGACGTCATCTACAACTGGCGGATATTggggtcg > 6:530280/1‑134 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTTACGTCATCGACCAGTCGCTGATATTGGGTGAg > 6:718300/1‑138 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCACTCCGGGCGCGTTTTGATTTGAGTGACGTCATCGACCACTCGCGGATATTGGGTGAg > 6:23091/1‑138 (MQ=255)
tAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGGTTGATTTGCGTGGCGTCATCGACCAGTCGCTGATTTTGGGTGAGGAt > 4:86744/1‑140 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAtt < 6:976371/138‑1 (MQ=255)
tGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTCGTGACGTCATCGACCAGTCGCTGCTATTTGGTTAGGATTTcc > 8:138657/1‑140 (MQ=255)
cgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCACTGCGGATCATCCCCTCCGGGCGCGTTTTGTGTTGCGTGACGTCATCGACCCGTGGGAGAGTGTGGGTGAGGGtttagag > 3:661665/1‑136 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGGCATCGACCCGGCGCTGATATTGGGTGTGGATTTcccc > 6:679253/1‑136 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 4:984017/140‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 2:1187611/140‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 1:1023240/140‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgc < 5:839921/138‑1 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGtt < 4:288067/140‑1 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTTCGTGACGTCATCGCCCAGTCGCTGATATTGGGTGGGGATTTACAGCGCATGtt > 2:1265455/1‑140 (MQ=255)
tAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTCGTGACGTCATCGACCAGTGGCGGGGTTTTGGTGAGGGTTTCCAGAGCATGGTCGTaa > 8:1128704/1‑140 (MQ=255)
tAATAGCTGGCGCAATATGGCTGCGACCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCAGGGCGCGTTTTGATTTGCGGGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTGCAGCGCATGTGCGTaa < 3:6092/140‑1 (MQ=255)
tAATAGCGGGCGCTAGATGGCGTCTCCCACAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGTGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTac < 8:574840/140‑2 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGGGTGACGTCATCGACCAGGCGCGGTTTTTTGGTGGGGCTTTGCAGCGCAGGTTCGTtacaacc > 1:56699/1‑139 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGGGACGTCATCGACCAGTCGCGGGTATTGGGTGTGGTTTTCCAGCGCATGGTCGTtaaaacc > 4:562081/1‑139 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGCGTGACGTCATCGACCAGTCGCGGGTATTGGGGGAGGGTTTCCAGCGCATGTTGGTtacaacc > 5:374175/1‑137 (MQ=255)
tGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGCGTGACGTCATCGACCAGACGCTGATATTGGGGGAGGATTTCCAGCGCATGTTCGTAACAACg > 6:799698/1‑138 (MQ=255)
ggCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGCGTGACGTCTTCGACCCGTCGGGGTTATTTGGTGAGGCTTTCCAGCGCCTGTTCGTAACAAAGcgg > 2:620558/1‑138 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGTTTTACAGCGCATTGTCGTAAAAACGCTGGc > 4:706087/1‑140 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 2:1226574/140‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 3:501232/140‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 8:523891/140‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 4:1258861/140‑1 (MQ=255)
agcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 7:820526/139‑1 (MQ=255)
atGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACttt < 3:808000/140‑1 (MQ=255)
gCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCGCCGGGCGCGTTTTGATTTGCGGGCCCTCAACGCCCAGTAGCGGCTATTGGGTGACGATTTGCAGCGCAGGTGCGTTACAACGCAGGCCCCTTtaag > 7:974361/1‑140 (MQ=255)
cTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGCGTGACGTCATCGACCAGTCGGGGGTATTGGGTGTGGGTTTGCAGCGCATGTTGGTAACAACGCTGGCCACTTtcagt > 3:732956/1‑140 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGGCGTCATCGGCCAGTCGCGGGTAGTTGGGGAGGGTTTCCCGCGGAAGTTCGGAACAACGCTGGCCCCGTtgagtcag > 1:752145/1‑140 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGCCGTCATCGCCCAGTCGCGGATATTGGGTGGGGCTTTCCCGCGCATGTTCGTAACAACGCAGGCCCCTTtcaggcac > 4:507394/1‑139 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGGGACGTCATAGACCCGGCGCTGATTTTTGGTGAGGATTTACAGGGCAAGTTCGTTACAACCCTGGCCCCTTtcagtccg > 8:820526/1‑138 (MQ=255)
caaaaccaaaacTGCAAGCAATGCGGATCATCCCCTCCGGGCGCGTTTTGGTTTGCGTGAGGGGATCGACCAGGCGCGGTTTTTTGGGGATGTTTTAGAGCGGGTGTTTGTTAAAAAGCTGGCCCCGTTGAGTGAgcg > 6:555900/1‑138 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGcc < 2:2823/140‑1 (MQ=255)
ccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCAcgcc < 7:1057761/140‑1 (MQ=255)
acTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCcgcg < 6:905404/138‑1 (MQ=255)
gCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 2:518634/140‑1 (MQ=255)
aaCCCATGCTGATCATCCCCTCCTGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTTATATTGGGAGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 2:590574/140‑1 (MQ=255)
aaCCAATGCTGATCATGCCCGCCGGGCGCGTTTTGATTTGCGTTACGTCATCGACCAGTCGCTGATATTGGGTGAGTATTTCCAGCGCATGTTCTTATCAACGCTGTCCACTTTCTGTCAGCGCCACGCCGCgagcggag < 4:1039270/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 7:582469/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 8:401001/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 3:212018/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 7:247600/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 6:23887/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 4:645604/140‑1 (MQ=255)
aaCCAATGCGGAGCATCCCCTCCGGTCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGGGAGGATTTCCAGCGCATGTTCTTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 3:1170583/140‑1 (MQ=255)
cAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGGCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 2:805185/140‑1 (MQ=255)
ctggggATCATCCCCTCCGGGCGCGTGTTGATTTGCGAGACGTCATCGCCCAGTCGCGGATATTGGGTGAGGCTTTCCAGCGCATGGTATTAACAACGCTGGCCACTTTCCGTCAGCGCCACGCCGCGAGCGGAGCGGtt < 1:1153221/136‑1 (MQ=255)
aTGCTGATCATCCCCTCCGTGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTTATATTGGGTGATGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGtt < 8:444865/140‑1 (MQ=255)
aTGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGTCCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 5:686674/138‑1 (MQ=255)
tGCGGATCATCCCCTCCGGGCGCGGTGTTAATTGCGGGCCGTGCTCGTCCAGTCGCAGATATTGGGTGTGGATTTTACCCGCATGTTCGGAAAAACCCAGGGCCCTTTCAGGGAGCCCCCCGCCCCGaccggggcgggtg > 4:625260/1‑137 (MQ=255)
gggATCATCCCCTCCGTGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGATGTCCACTTTCAGTCAGCTCCACGCCGCGAGCGGAGCGGTTcag < 7:287978/139‑1 (MQ=255)
cGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 3:410101/140‑1 (MQ=255)
cGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTc < 6:836941/138‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTgcagca < 3:1217599/140‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 1:1019201/140‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 1:229199/140‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGGGACGTCAGCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 4:1208492/140‑1 (MQ=255)
atcCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCGGATATTGGGTGAGGATTTACAGCGCATGTTCGTAACAACGCTGGCCCCTTTCAGTCAGCGCCCCGCCGCGCGCGGAGCGGGTCAGCAGAgt > 2:963183/1‑140 (MQ=255)
ccccTCCGGGCGCGTTTTGATTTGCGGGACGTCATCGCCCAGTCGCGGATATTGGGGGGGGATTTACAGCGGATGTTGGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGCGCGGGTCAGCAGAgttt > 8:763491/1‑139 (MQ=255)
ccccTCCGGGCGCGGTTTGGTTTGCGTGACGTAAACGAACAGTCGCGGATTATGGGTGAGGCGTTCAAGCGCATGTTCGTAACAACGCAGGCACCGTTAACTCCTCGCCCACCCGCGAGCGGTGCGGTTcagcagctttg > 4:916697/1‑135 (MQ=255)
ccTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCGGATATTTGGTGAGGATTTGCAGCGCATGTTGGTAAAAACGCTGGCCACTTTAAGTAAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAgttt > 6:394357/1‑137 (MQ=255)
ccGGGCGCGGTTTGGTTTGCGTGACGTCATCGCCCAGGGGCGGATATTGGGTGAGGATTTACAGCGCCTGGTGGTAACAACGCAGGCCCCTTTGAGTCAGCGCCCCGCCGCGCGCGGAGCGGGTCCGCAGAGTTGTTGcc > 4:26905/1‑140 (MQ=255)
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AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGTATTT > NZ_CP022686/1954785‑1955062
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
