Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,954,923 |
T→G |
15.3% |
T92P (ACG→CCG) |
ttdR ← |
DNA‑binding transcriptional activator TtdR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,954,923 | 0 | T | G | 15.3%
| 319.6
/ 11.4
| 187 | T92P (ACG→CCG) | ttdR | DNA‑binding transcriptional activator TtdR |
| Reads supporting (aligned to +/- strand): ref base T (34/119); new base G (30/4); total (64/123) |
| Fisher's exact test for biased strand distribution p-value = 6.30e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 194 total aligned reads displayed.
AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCG > NZ_CP022686/1954785‑1955057
|
aaTCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 1:797011/1‑140 (MQ=255)
tCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCGAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 4:623914/1‑138 (MQ=255)
tCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtttt > 1:1023608/1‑140 (MQ=255)
tcgatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑g > 7:841821/1‑140 (MQ=255)
gatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTg < 1:1124379/140‑1 (MQ=255)
gatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTg < 2:1005517/140‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑Gt < 3:1285902/138‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGa < 1:880283/140‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGa < 6:532677/140‑1 (MQ=255)
atcgaACAATGCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGAGCATCCCCTCCGGGCGCGTTTTGATTTGC‑Gt < 4:80727/138‑1 (MQ=255)
cAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTc < 4:882591/138‑1 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGAc < 5:659727/140‑1 (MQ=255)
aaaaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCa < 1:179966/140‑1 (MQ=255)
aaaaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCa < 8:1197052/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCa < 3:798723/138‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGt < 2:1327121/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGt < 7:646874/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGC‑GTGAAGTCATCGACCact > 8:335950/1‑138 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGt < 3:243873/138‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCg < 1:1131317/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCg < 2:1332078/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCg < 2:912747/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCg < 7:369314/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCg < 1:253042/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCg < 8:574651/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCGGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCg < 5:820744/140‑1 (MQ=255)
cgCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGC‑GGGACGTCATCGACCAGTCg < 6:628086/139‑1 (MQ=255)
cACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCt < 6:175388/140‑1 (MQ=255)
aCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGC‑GTGCCGGCATCGACCAGTCGcgg > 8:844546/1‑138 (MQ=255)
cTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑CTGACGTCATCGACCAGTCGcag > 4:1083779/1‑136 (MQ=255)
tGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGa < 3:1181284/138‑1 (MQ=255)
gTAAATCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGACCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGatat < 7:349501/140‑1 (MQ=255)
cTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTggg < 7:162103/140‑1 (MQ=255)
cTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTg < 3:169564/138‑1 (MQ=255)
cAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTg < 7:1195155/140‑1 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTGTGATTTTCGGTGA‑GTCATGGCCCAGTCGCTGATATTGGGTgcg > 5:323475/1‑138 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATATGC‑GTGACGTCATCGACCAGTCGCGGCTATTGGGTGAg > 8:886884/1‑140 (MQ=255)
gATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTATTTGC‑GTGACCTCATCGACCAGGCGCGGATATTTGGTgggg > 5:1033683/1‑140 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑g > 3:41197/1‑104 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGAACATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGGCGCTGATATTGGGTGAg > 3:97424/1‑138 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCTCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGAtt < 3:440580/138‑1 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GGGACGTCATCCACCAGGACCGGATATTTGGGGAGGAttta > 1:1199572/1‑139 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGC‑GTGACGTCATCGACCAGTCGCGGATATTGGGGGCGGAttta > 2:990453/1‑139 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGGTTTGC‑GTGACGGCCTCGCCCAGTCGCTGCTATTGGGTGAGGGttta > 6:993956/1‑139 (MQ=255)
gcgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGA‑GTGACGTCATCGCCCAGTCGCTGTGTTTTGGTGAAGATTTc > 4:670058/1‑138 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGC‑GTGGCGTCATCGGCCAGTCGGGGATATTTGGTGGGGATTTcccg > 4:20992/1‑136 (MQ=255)
aTCAGTTCGGTAATAGCTTGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGAGGATCATCCCCTCCGGGAGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 5:808689/140‑1 (MQ=255)
aTCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 6:364032/140‑1 (MQ=255)
aTCAGTGCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAgcgc < 7:408020/140‑1 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGC‑GTGGCGTCCTCGACCAGTCGCTGGTATTGGGTGGGGGTTTGCAgcg > 3:123044/1‑138 (MQ=255)
aGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCa < 4:461988/138‑1 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCGAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATg < 3:623914/138‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATTCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGGCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACg < 8:37343/140‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACg < 7:538441/140‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACg < 1:336782/140‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGGTTGTTTTTG‑GTGACGGGATCGACCCGTCGGGGGTTTTTGGTGGGGATTTGCCGCGCATGGTGGTtacaacc > 8:210087/1‑139 (MQ=255)
ggCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTGC‑GTGACGTCATAGACCAGTCGCTGATATTGGGTGAGGGTTTACAGCGCATGTTAGTTACAACGCTg > 8:1060488/1‑140 (MQ=255)
ggCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGGTTTGG‑GTGACGTCATCGCCCAGTCGCGGATTTTGGGTGAGGATTTCCAGCGCATGTTCGTtaaaacccgg > 2:414566/1‑136 (MQ=255)
ggCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGC‑GTGTCGTACTAGACCAGTCGCGGGTTTTGGGGGAGGATTTACAGCGCCTGTTGGTAACAACCCTg > 5:499198/1‑140 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAACACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 4:1055113/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 8:1003361/140‑1 (MQ=255)
gcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGC‑GTGGCGTCATCGCCCAGTCGCGGATATTGGGTGAGGATTTGCAGCGCATGTTCGTAACAACGCggg > 4:1227496/1‑138 (MQ=255)
tatGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCGGCTATTGGGGGAGGGTTTACAGCGCATGTTCGTAACAAAGCGGGccccat > 6:95366/1‑136 (MQ=255)
cTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGA‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTtcagt < 5:1122473/140‑1 (MQ=255)
cTGCGACCATAACCAACACTGCAACCAATGCGGATCATCCCCGCCGGGCGCGGTTTGATTTGC‑GTGACGTCATCGACCAGTCTCTGATATTGGGTGAGGATTTCCAGCTCATGTTCGTAACAACGCTGGCCACTTtcatt < 2:830962/140‑3 (MQ=255)
tGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTTC‑GTGACGTCATCGACCATTCGCTGATTTTGGGTGAGGATTTACAGCGCATGTTCGTAACAACGCTGGCCACTTtcag > 4:546292/1‑138 (MQ=255)
gcgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGG‑GTGGCGTCATCGCCCAGTGGCGGATATTGGGTGTGGGTTTGCAGCGCCTGTTAGTAAAAACGCAGGCCCCttttact > 3:337281/1‑134 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGG‑GTGGCGTCATCGCCCAGGCGCTGATATTGGGTGAGGATTTGGAGCGCATGTTCGTAACAACGCTGGCCACTTtcattcag > 2:1266710/1‑140 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGG‑GTGTCGTCATAGACCAGTGGCTGTTATTGGGGGGGGGTTTACAGCGCAGGGTCGGAACAACCCTGGGCACgttgatgaag > 1:1012881/1‑133 (MQ=255)
cgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGC‑GTGACGTCATCGACCAGGCGCGGATATTTGGTGAGGTTTTGCAGCGCATGTTAGTAACAACGCTGGCCACATtaagtcac > 5:607967/1‑139 (MQ=255)
cccAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGC‑GTGACGTCATCGACCCGTCGCTGATATTTGGTGCGGTTTTACAGCGCATGTTGGTAACAACGCTGGCCACGTTAAGTCAgcc > 1:133204/1‑139 (MQ=255)
ccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCAcg < 3:1011713/138‑1 (MQ=255)
acTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgag < 8:265495/140‑1 (MQ=255)
acTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgag < 7:960924/140‑1 (MQ=255)
gCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCTCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagc < 3:539119/138‑1 (MQ=255)
gCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagc < 3:636663/138‑1 (MQ=255)
caCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTTATATTGGTTGAGGATTTCCAGCGCATGTTCCTAACAACGCTGGCCACTTTCAGTCCGCGCCACGCCGCgagcgg < 3:1212718/137‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 8:236536/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 6:711487/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 2:186380/140‑1 (MQ=255)
aaCCAATGAGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 6:245853/140‑1 (MQ=255)
aCCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGG‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgga > 4:265105/1‑138 (MQ=255)
cAATGCGGATCCTCCCCTCCGGGCGAGTTTTGATTTTC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 2:1297098/140‑1 (MQ=255)
cAATGCGGATCATCCCCTCCGGGCGCGTTTTGTTTTTC‑GTGGCCAGATAGACCAGTAGCTGGTAATGGGTGAGGATTTACAGCGCATGTTAGTAACCACCCAGGCCACAATCAGGAATCCCCCCCCCGCgcgcggagg > 4:791821/1‑137 (MQ=255)
cAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 2:780485/140‑1 (MQ=255)
aTGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 3:393065/138‑1 (MQ=255)
aTGCGGAGCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATGTCCAGCGCATGAGCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGtt < 7:177746/140‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 2:1195999/140‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 1:540113/140‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 3:937658/138‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGGCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 2:557172/140‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GGGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGAGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 3:309812/138‑1 (MQ=255)
ccccTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg > 4:73606/1‑122 (MQ=255)
ccccTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 3:73606/122‑1 (MQ=255)
tCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTTAGGAGTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTGCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAgttgtt < 4:355453/138‑1 (MQ=255)
ccGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGcc < 6:1079351/140‑1 (MQ=255)
ggCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTTGGTGAGGATTTCCCGCGCATGTTAGTTAAAACGCAGGGCACTTTCAGTCAGCGCCCCGCCGCGCGCGGGGCGGTTCAGCAGAGGTGTTGCCAGc > 6:398423/1‑140 (MQ=255)
ggCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGc < 2:306566/140‑1 (MQ=255)
gcgcGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACTCTGGCCACTTTCAGTCATCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCg < 2:645299/140‑1 (MQ=255)
gcgcGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCg < 7:150510/140‑1 (MQ=255)
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AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGC‑GTGACGTCATCGACCAGTCGCTGATATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCG > NZ_CP022686/1954785‑1955057
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
