Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F2 I0 R1
|
207 |
10827.9 |
9263290 |
98.4% |
9115077 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,954,923 |
T→G |
22.1% |
T92P (ACG→CCG) |
ttdR ← |
DNA‑binding transcriptional activator TtdR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,954,923 | 0 | T | G | 22.1%
| 212.2
/ 30.3
| 161 | T92P (ACG→CCG) | ttdR | DNA‑binding transcriptional activator TtdR |
| Reads supporting (aligned to +/- strand): ref base T (43/79); new base G (34/4); total (77/84) |
| Fisher's exact test for biased strand distribution p-value = 1.88e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 164 total aligned reads displayed.
AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGTA > NZ_CP022686/1954785‑1955059
|
aaTCAATTTGTCGATCGAACAATTCAAAATGCCCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACAAAAACTCCAACCAATGCGGATCATCCCCTCCGGGCGCGtg > 4:8246/1‑139 (MQ=255)
aaTCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGtt > 1:972729/1‑140 (MQ=255)
aTTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTg < 5:980994/138‑1 (MQ=255)
ttGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGAt > 5:895194/1‑138 (MQ=255)
ttGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGAt > 6:704089/1‑138 (MQ=255)
ttGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGAATCAGTTCGGTAATAGCTGGCGCAATATTGCTGCGCCCAAAACCAAATCTGAAACCAATGCGGATCATCCCCTCCGGGCGCGTTGTGAt > 8:816215/1‑138 (MQ=255)
tcgatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAACCTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCg > 3:936562/1‑140 (MQ=255)
gatcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCg < 5:830529/138‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCTGATCATCCCCTCCGGGCGCGTTTTGATTTGCGt < 6:839159/138‑1 (MQ=255)
atcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGa < 4:1113667/140‑1 (MQ=255)
tcgaACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGAc > 2:708037/1‑140 (MQ=255)
tCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAc < 3:12275/140‑1 (MQ=255)
aaaaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGAc < 6:895194/138‑1 (MQ=255)
aaaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTTATTTTCGGGAAGTCAtactcc > 6:250849/1‑133 (MQ=255)
aaTGCCCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 2:868492/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATATCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGACCa < 6:615561/138‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 4:242519/140‑1 (MQ=255)
aaTGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGCGGGACGTAATAGACCact > 1:1019487/1‑138 (MQ=255)
tggaCCTGTAACTCAGTATAATTGCGCATCTGTTCGGTAATAGATGTCGCATTATGGCTGCGCCCAAATCCAAAACTTCAACCAATGCGGATCATCCCCTCCGGGCGCTTTTTGATTTGCGTGACGTCATCGACCAGTCg < 4:885580/137‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 6:1046070/138‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 7:523209/138‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCg < 2:564681/140‑1 (MQ=255)
tGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCg < 2:972729/140‑1 (MQ=255)
tGCACATGTAACTCAGGATAATTGAGCATCAGTTCGTTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCACTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGCCCAGt < 6:1000807/138‑1 (MQ=255)
aCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTTCGTTACGTCATCGCCCAGTCGCTg > 3:383634/1‑140 (MQ=255)
aCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGAGTGACGTCATCGACCAGTCGCTg > 3:631224/1‑140 (MQ=255)
aCCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGGTTTATTTTCGTGAAGACAAAGACCactggcgg > 3:125394/1‑133 (MQ=255)
cTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCg > 5:349745/1‑116 (MQ=255)
cTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCg < 6:349745/116‑1 (MQ=255)
tGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGa < 7:1039233/138‑1 (MQ=255)
gTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAATACCAAAACTGCAACCAATGCGGATCATCCCCTCCTGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGa‑tat < 1:601628/140‑1 (MQ=255)
cTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTggg < 3:556744/140‑1 (MQ=255)
cTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTg < 5:627170/138‑1 (MQ=255)
cAGGATAATTTCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCACCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCTTGACGTCATCGACCAGTCGCTGA‑TATTggg < 5:78603/138‑1 (MQ=255)
cAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACAGCAACCAATGAGGATCATCCCCTCCGGGCGCGTTTTGATTTGCTTGACGTCATCGACCAGTCGCTGA‑TATTGGGTg < 3:78752/140‑1 (MQ=255)
ggATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCTCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGAGCGTTTTTATTTGCGTGACGTCATCGACCAGGCGCTGC‑TATTGTGTGAg > 1:305374/1‑140 (MQ=255)
aTAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGt < 6:305614/121‑1 (MQ=255)
tAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCACCCAATGCGGATCATCCCCTCCGGGCGCGGGTTGATTTGCGTGTCGTCCTCGACCAATCGGGGG‑GTTTGGGTGAgg > 7:104952/1‑138 (MQ=255)
ttGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGAtt < 5:1021450/138‑1 (MQ=255)
gcgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTTCAACAAATGCGGATCATCCCCTCCGGCCGCGTTTTTATTTGAGTGCCGACATACACCAGTCCCTGA‑GAGTGGGTGAGGAttta > 8:263634/1‑137 (MQ=255)
cgcATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTTCGGGTCGTCATAGACCAGTAGCGGA‑TATTGTGGGGGGTTTTACAg > 1:678262/1‑140 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAgcg > 2:1150982/1‑140 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTACGTGCCGTCAAACACCAGGAGCACA‑AATTGGCGGAGGAtttgacc > 6:964182/1‑134 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTAATAGACCAGTCGCGGA‑TATTGGGTGAGGATTTACAgcg > 1:606834/1‑140 (MQ=255)
cATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGGTTGATTTGCGTGACGTCCACGACCAGTCGCAGA‑TATTTGGTGAGGATTTCCAgcc > 2:1163291/1‑139 (MQ=255)
tCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGGGACGGCATCGACCAGTCGCTGA‑TAATGGGGGAGGAATTGCAgcc > 6:1127029/1‑137 (MQ=255)
cAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGAAGTCATCGACCAGTCGCGGA‑TTATGGGTGAGGATTTACAgggc > 8:561105/1‑138 (MQ=255)
gTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACAAATGCGGATCATCCCCTCCGGGCGCGTTGTGATTTGCGGTGCGTAATCGCACAGTCGCTGA‑TATTTGGTGAGGTTTTACAgcgccg > 5:589331/1‑136 (MQ=255)
ttCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGtt < 2:341058/140‑1 (MQ=255)
cGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGAAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGGGATGCTTTCCAGCGCATGtt > 8:816387/1‑138 (MQ=255)
gTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTTCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCg > 8:831541/1‑138 (MQ=255)
gTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGTTTTGGGTGTCGGCATAGCCCAGTCGCTGAGTTTTGGGT‑AGGGTTTTCAGCGGCTGttag > 7:155430/1‑136 (MQ=255)
tAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGt < 5:237855/138‑1 (MQ=255)
gCTGGCGCAATATGGCTGCGCCCAAAACCATAACAGCAACCAATGCGGATCATCCCCTCCGGGCGCTTTTTGATTTGCGTGTGGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTaccaa < 7:902826/138‑1 (MQ=255)
ggCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTGATCGCCCAGGCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGGTGGTAACAACGcag > 4:482163/1‑138 (MQ=255)
ggCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGTGTTGCGTGACGTCATACGCCCGGCGCTGC‑TATTGGGTGTGGATTTGCAACGCAGGTTAGTaaaaaacctg > 2:392882/1‑135 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 8:423749/138‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 3:394079/140‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGc < 1:437186/140‑1 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGAGTGACGTCATAGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCAAGTTCGTAACAACCCTg > 6:528604/1‑138 (MQ=255)
cgcAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 5:205845/138‑1 (MQ=255)
cAATATGGCTGCGCCCAAAACCAACACTGCAACCAATGCGGCTCATCCCCTCCGGGCGCGTTTTTTTTTTGCTGTCAGCATCGACCAGTCGGCGA‑TATTGGGGGGGGCTGTCCAGGGAAGGTTGGTAACAAAGCTggg > 6:295093/1‑137 (MQ=255)
cAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTg < 5:874316/136‑1 (MQ=255)
atatGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGGTCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCa < 6:182679/138‑1 (MQ=255)
tGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGGTTGATTTGCGTGACGTCATCGACCCGTCGCTGA‑TATTGGGTGAGGATTTCAACCGCAAGTTCGTAAAAACACGGGCCCCtt > 5:1100365/1‑138 (MQ=255)
gcgcCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGGTTTTGGGGGCGTCATCGCCCCGTCGCGGA‑TATTGGGTGTGGATTTACAGCCGATGTTGGTAACAAAGCCGGGCACTTtcagt > 7:876580/1‑138 (MQ=255)
cccAAAACCAAAACTGCACCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGGGAGGATTTACAGCGCATGTTCGTTACAACGCTGGCCACTTTCAGTCAgcc > 4:1078593/1‑139 (MQ=255)
cccAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTTCGTAACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCAAGGTCGTAAAAACGCTGGCCCCTTtaagtcag > 6:295646/1‑138 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTTATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTTGGTGAGGATTTCAAGCGGATGTTCGTAACAACGCTGGACACGTTAAGTAAgcg > 6:875921/1‑138 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGcc < 2:408374/140‑1 (MQ=255)
caaaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTGCGTGCCGTCATAGACCAGTCGCGGG‑TATTGGGTGGGGATTTACCGCGCCGGTTGGTAACAAACCGTGCCCCGTTCAGTCAgcc > 6:62109/1‑137 (MQ=255)
aaaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTGTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGcc < 6:800885/138‑1 (MQ=255)
aaccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCAACGACCAGTCGCTGA‑TATTTGGTGGGGTTTTCAAGCGCATGTTCGTAAAAAACCGGGCCACATTCAGTAACCGCCAcc > 2:1009191/1‑139 (MQ=255)
ccaaaacTGCAACCAATGCGGATCATCCCCTCCGGGCGCGGTTTGATTTTGGGGCCGTCATCGACCACGGGGGGC‑TTATGGGTGCGGATTTACAGCGCATGTTAGTTACAAACCGGGCCACGTTAAGTCAGCGCCAcc > 8:608851/1‑137 (MQ=255)
gCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 1:1026071/140‑1 (MQ=255)
aaCCACTGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 6:472803/138‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 2:976168/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 4:43148/140‑1 (MQ=255)
aaCCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGGGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcgg < 6:217379/138‑1 (MQ=255)
aaCCAATGCGGAGCATCCCCTCCGGGCGCGATTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGAGCATGTTCGTAACAACGATGGCCACTTTCAGTAAGCTCCACGCCGCgagcggag < 3:153087/140‑1 (MQ=255)
aaCCAAAGCGGATCATCCCCTCCGGGCGCTTTTTGATTTGCGTGACGGCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCgagcggag < 4:513387/140‑1 (MQ=255)
cAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGagcggagcgg < 3:150742/140‑1 (MQ=255)
ttGCGGATCATCCCCTCCGGTCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGtt < 3:831089/139‑1 (MQ=255)
aTGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGtt < 3:1078593/140‑1 (MQ=255)
cGGATCATCCCCTCCGTGCGCGTTTTGATTTGCGTGACGGCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 3:3258/140‑1 (MQ=255)
cGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTc < 8:661861/138‑1 (MQ=255)
tatcatcCCCTCCGGGCGCGTTTTGTTTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 3:905331/139‑1 (MQ=255)
gATCCTCCCCTCCGGGCGCGTTTTGATTTGCGTGACGGCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTGCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcag < 6:381177/138‑1 (MQ=255)
gATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTGCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTcagca < 2:357069/140‑1 (MQ=255)
tcatcCCCTCCGGGCGCGGTTTGATTTGGGTGCCGTCATCGACCAGTCGCGGA‑TATTTGGGGAGGATTTGCAGCGCATGTTCGTAACAAACCGGGCCACGGTCAGTCAGCGCCCCCCCGCGCGCGGCGCGGGTCAGCaga > 2:1192123/1‑140 (MQ=255)
ccccTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCGGA‑TAATGGGTGAGGATTTCCAGCGCATGTTAGTAACAACGCTGGGCACGTTCAGTCAGCGCCACGCCGCGCGCGGAGCGGTTCCGCAGAgttg > 4:905148/1‑140 (MQ=255)
ccccTCCGGGCGCGTTTTGATTTGCGTGACGGCATAGACCAGTCGCGGA‑TATTGGGGGAGGCTTTACAGCGCATGATCGTTACAACGCGGGCCCCTATCAGTAAGCGCCCCGCCGCGCGAGGCGCGGGTCAGGAGCgttg > 2:1134722/1‑140 (MQ=255)
tCCGGGCGCGTTTTGATTTGGGTGACGTCATAGACCAGTGGCTGA‑TATTGGGTGAGGATTTACAGCGCATGGTAGTAACAAACCTGGGCCCTTTAAGTCAGCGCCACGCCGCGAGCGGGGCGGTTCAGCAGAGttgttgg > 4:1182075/1‑139 (MQ=255)
ccGGGCGCGTTTTGATTTGCGTGACCTCAACGACCAGTCGCGGA‑TTAAGGGTGAAGATTTACAGCGGATGTTAGTAAAAAACCTGGCCCATATAAGTCATCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGcc > 2:730994/1‑140 (MQ=255)
cGGGCGCGTTTTGATTTGCGTGACGTCATCGCCCAGTCGCTGA‑TATTGGGTGAGGATTTACAGCGCATGTTCGTAACAACGCTGGCCCCTTTAAGTCAGCGCCACGCCGCGAGCGGAGCGGTTAAGCAGAGTTGTTGc > 8:528848/1‑138 (MQ=255)
gggCGCGTTTTTATTTTCGTGACGTCATAGACCAGTCGCGGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACCCTGGCCCCTTTCAGTCAGCGCCCCGCCCCGAGCGGAGCGGGTCAGCAGAGTTGGTGcc > 7:458009/1‑138 (MQ=255)
gggCGCGTTTTGATTTGGGTGACGTCATCGACCAGTCGCGGA‑TTTTGGGTGAGGCTTTCCCGCGCATGTTCGTAACAACGCTGGCCCCGTTCAGTCAGCGCCACGCCGCGAGCGGCGCGGTTCAGCAGAGgtgttggc > 8:465012/1‑136 (MQ=255)
ggCGCGTGTTGATGTGCGTGACGTCATCGACCAGTCGCTGA‑TACTGGGTGAGGATTTCCAGCGCATGTTCTTAACTACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGc < 4:224465/140‑1 (MQ=255)
gcgTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGTa < 1:320233/140‑1 (MQ=255)
gcgTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGTa < 4:976724/140‑1 (MQ=255)
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AATCAATTTGTCGATCGAACAATTCAAAATGCACCTGTAACTCAGGATAATTGCGCATCAGTTCGGTAATAGCTGGCGCAATATGGCTGCGCCCAAAACCAAAACTGCAACCAATGCGGATCATCCCCTCCGGGCGCGTTTTGATTTGCGTGACGTCATCGACCAGTCGCTGA‑TATTGGGTGAGGATTTCCAGCGCATGTTCGTAACAACGCTGGCCACTTTCAGTCAGCGCCACGCCGCGAGCGGAGCGGTTCAGCAGAGTTGTTGCCAGCGTA > NZ_CP022686/1954785‑1955059
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
