mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 50,280 | T→C | F153S (TTT→TCT) | folA → | type 3 dihydrofolate reductase |
| RA | 481,301 | (G)5→6 | coding (85/648 nt) | acrR → | multidrug efflux transporter transcriptional repressor AcrR |
| RA | 726,489 | A→G | E484G (GAA→GGA) | rhsC → | rhs element protein RhsC |
| RA | 1,613,687 | G→T | G104V (GGC→GTC) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356976 | 357575 | 600 | 27 [19] | [18] 21 | [lacA] | [lacA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 174 (1.470) | 66/170 | 0.1 | 86.6% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | 3512441 = | 27 (0.230) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 173 (1.470) | 58/170 | 0.2 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 48 (0.410) | 25 (0.260) | 18/138 | 1.9 | 37.4% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 45 (0.470) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 48 (0.410) | 15 (0.160) | 14/138 | 2.4 | 26.4% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 45 (0.470) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 82 (0.700) | 38/168 | 0.7 | 94.3% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 5 (0.040) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1391495 | NA (NA) | 163 (1.380) | 62/170 | 0.1 | 100% | intergenic (+146/‑127) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1903069 = | 0 (0.000) | intergenic (‑46/‑113) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
| * | ? | NZ_CP009273 | = 1903072 | 10 (0.080) | 133 (1.130) | 53/170 | 0.3 | 93.0% | intergenic (‑49/‑110) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | = 1972751 | 4 (0.030) | 213 (1.800) | 69/170 | 0.1 | 98.2% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | = 3512449 | 31 (0.260) | 160 (1.360) | 51/170 | 0.3 | 83.8% | intergenic (‑26/+375) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
| * | ? | NZ_CP009273 | 4532499 = | 56 (0.470) | 41 (0.390) | 25/152 | 1.4 | 36.0% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 96 (0.910) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 56 (0.470) | 58 (0.550) | 26/152 | 1.3 | 44.3% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 96 (0.910) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||