mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 58 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 74.2% | 17.2 / 16.5 | 31 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 67.7% | 10.6 / 19.9 | 31 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 63.6% | ‑2.6 / 10.8 | 11 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 4,195,536 | 0 | G | T | 62.5% | 1.0 / 15.4 | 16 | T108T (ACC→ACA) | purD | phosphoribosylamine‑‑glycine ligase |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 62.1% | 5.2 / 34.8 | 29 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 4,026,091 | 0 | T | G | 60.0% | 8.7 / 16.7 | 15 | G80G (GGT→GGG) | yigZ | IMPACT family protein |
| * | NZ_CP009273 | 1,213,865 | 0 | G | T | 58.3% | ‑0.8 / 12.6 | 12 | S361I (AGT→ATT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 57.9% | 0.8 / 21.5 | 19 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 3,401,195 | 0 | T | G | 57.9% | 11.2 / 18.9 | 19 | V77G (GTA→GGA) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 57.1% | 21.8 / 46.0 | 35 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 646,237 | 0 | C | T | 57.1% | 1.5 / 13.3 | 14 | M1M (ATG→ATA) † | citD | citrate lyase acyl carrier protein |
| * | NZ_CP009273 | 4,195,549 | 0 | G | T | 57.1% | ‑2.0 / 10.9 | 14 | S104* (TCA→TAA) | purD | phosphoribosylamine‑‑glycine ligase |
| * | NZ_CP009273 | 4,368,619 | 0 | A | C | 57.1% | 12.7 / 26.5 | 21 | V48G (GTA→GGA) | ampC | BlaEC family class C beta‑lactamase |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 56.2% | 9.6 / 20.0 | 16 | E391D (GAA→GAC) | guaD | guanine deaminase |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 56.2% | 20.4 / 43.7 | 32 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 56.0% | 15.5 / 33.6 | 25 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 542,232 | 0 | G | T | 55.6% | 4.8 / 12.2 | 9 | V33F (GTT→TTT) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 55.6% | 9.2 / 39.3 | 27 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 4,558,321 | 0 | T | G | 55.2% | 25.2 / 31.2 | 29 | T6P (ACC→CCC) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 2,852,466 | 0 | T | G | 55.0% | 3.3 / 16.6 | 20 | V672G (GTG→GGG) | mutS | DNA mismatch repair protein MutS |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4532507 | 8 (0.320) | 3 (0.130) | 3/150 | 2.2 | 18.7% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 19 (0.850) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||