mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,006,268 | 0 | T | A | 72.2% | 24.7 / 10.8 | 19 | intergenic (‑92/‑145) | metR/metE | HTH‑type transcriptional regulator MetR/5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 66.7% | ‑5.0 / 15.0 | 15 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 2,103,492 | 0 | A | G | 64.3% | 7.1 / 11.5 | 14 | V43A (GTC→GCC) | rfbC | dTDP‑4‑dehydrorhamnose 3,5‑epimerase |
| * | NZ_CP009273 | 4,058,940 | 0 | T | A | 64.3% | ‑5.9 / 10.7 | 14 | T63S (ACC→TCC) | yihO | MFS transporter |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 61.5% | 5.4 / 11.9 | 13 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 4,058,951 | 0 | G | C | 61.5% | 3.4 / 11.2 | 14 | A59G (GCG→GGG) | yihO | MFS transporter |
| * | NZ_CP009273 | 2,490,528 | 0 | G | T | 60.0% | ‑0.4 / 10.8 | 10 | intergenic (+57/+8) | ypdK/alaC | membrane protein YpdK/alanine transaminase |
| * | NZ_CP009273 | 443,152 | 0 | T | A | 58.3% | 0.2 / 10.9 | 12 | K4* (AAG→TAG) | cyoE | heme o synthase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 57.9% | 0.4 / 19.9 | 19 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 57.9% | 3.5 / 19.9 | 19 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,738,402 | 0 | A | C | 57.1% | 0.5 / 10.0 | 15 | D80A (GAC→GCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 4,004,152 | 0 | T | G | 57.1% | 12.3 / 16.2 | 14 | V198G (GTG→GGG) | yigL | sugar/pyridoxal phosphate phosphatase YigL |
| * | NZ_CP009273 | 172,772 | 0 | A | G | 56.5% | 17.5 / 26.1 | 23 | G393G (GGA→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 1,634,789 | 0 | A | C | 56.2% | 10.5 / 16.0 | 16 | G18G (GGT→GGG) | essD | phage lysis protein EssD |
| * | NZ_CP009273 | 1,673,945 | 0 | T | G | 56.2% | 4.5 / 18.9 | 16 | G44G (GGT→GGG) | ydgI | amino acid permease |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 55.0% | 19.2 / 27.5 | 20 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,710,374 | 0 | T | G | 55.0% | 11.8 / 26.4 | 20 | G156G (GGT→GGG) | yiaD | OmpA family lipoprotein |
| * | NZ_CP009273 | 431,953 | 0 | A | C | 54.5% | 8.1 / 11.9 | 11 | V288V (GTA→GTC) | thiL | thiamine‑phosphate kinase |
| * | NZ_CP009273 | 261,760 | 0 | A | C | 53.8% | 9.2 / 12.0 | 13 | G13G (GGT→GGG) | BW25113_RS01265 | hypothetical protein |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 53.8% | 10.9 / 16.9 | 13 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |