mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 55 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,285,580 | 0 | A | G | 46.1% | 225.1 / inf | 460 | I274T (ATA→ACA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,575 | 0 | T | G | 42.3% | 371.5 / inf | 461 | N276H (AAT→CAT) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,647 | 0 | C | A | 41.6% | 335.0 / inf | 507 | V252L (GTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,567 | 0 | C | T | 41.3% | 360.9 / inf | 463 | L278L (CTG→CTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 2,982,236 | 0 | T | C | 40.0% | ‑6.0 / 14.7 | 15 | noncoding (284/1550 nt) | EO946_RS15435 | 16S ribosomal RNA |
| * | NZ_CP034943 | 2,991,236 | 0 | C | G | 37.9% | 224.8 / 74.2 | 173 | intergenic (+37/‑170) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 634,054 | 0 | C | G | 33.1% | 311.3 / 60.7 | 191 | E573Q (GAA→CAA) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 1,730,093 | 0 | G | C | 28.0% | 228.2 / 24.8 | 136 | E172Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 549,144 | 0 | A | C | 28.0% | 308.0 / 16.7 | 175 | Q52H (CAA→CAC) | EO946_RS02865 | PLP‑dependent aminotransferase family protein |
| * | NZ_CP034943 | 2,991,227 | 0 | T | G | 27.6% | 272.0 / 53.4 | 182 | intergenic (+28/‑179) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 3,394,367 | 0 | C | G | 26.7% | 420.2 / 32.7 | 222 | G178A (GGA→GCA) | ppaX | pyrophosphatase PpaX |
| * | NZ_CP034943 | 1,097,488 | 0 | G | C | 26.4% | 476.3 / 47.1 | 242 | T77T (ACG→ACC) | EO946_RS05675 | MarR family transcriptional regulator |
| * | NZ_CP034943 | 1,730,096 | 0 | G | C | 26.3% | 224.5 / 28.5 | 136 | E173Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 2,991,252 | 0 | C | A | 25.5% | 295.6 / 27.5 | 162 | intergenic (+53/‑154) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 1,366,115 | 0 | G | C | 25.1% | 393.7 / 27.8 | 198 | E205Q (GAA→CAA) | EO946_RS07135 | PepSY domain‑containing protein |
| * | NZ_CP034943 | 177,062 | 0 | C | A | 24.9% | 453.7 / 33.9 | 233 | intergenic (+235/‑37) | EO946_RS01020/EO946_RS01025 | alcohol dehydrogenase/SulP family inorganic anion transporter |
| * | NZ_CP034943 | 2,830,523 | 0 | C | G | 24.6% | 465.6 / 49.7 | 244 | L89V (CTT→GTT) | brnQ | branched‑chain amino acid transport system II carrier protein |
| * | NZ_CP034943 | 3,285,713 | 0 | G | A | 24.5% | 497.4 / 167.1 | 246 | L230L (CTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 177,053 | 0 | C | A | 24.4% | 380.3 / 24.9 | 206 | intergenic (+226/‑46) | EO946_RS01020/EO946_RS01025 | alcohol dehydrogenase/SulP family inorganic anion transporter |
| * | NZ_CP034943 | 1,097,494 | 0 | A | C | 24.4% | 460.6 / 29.7 | 242 | K79N (AAA→AAC) | EO946_RS05675 | MarR family transcriptional regulator |
| Marginal new junction evidence (lowest skew 10 of 49 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 607423 | 325 (1.060) | 14 (0.240) +108 bp |
6/52 | 2.2 | 17.7% | coding (266/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607451 = | 344 (1.120) | coding (294/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607210 | 516 (1.680) | 16 (0.050) | 12/256 | 8.0 | 3.1% | coding (53/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607823 = | 492 (1.680) | coding (666/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607349 = | 340 (1.110) | 14 (0.050) | 8/248 | 9.4 | 5.1% | coding (192/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607627 | 209 (0.740) | coding (470/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607210 | 515 (1.680) | 19 (0.070) +AGCGACAGGAGCTACC |
7/236 | 9.5 | 5.4% | coding (53/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607587 = | 241 (0.790) | coding (430/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607715 | 334 (1.090) | 8 (0.030) | 8/254 | 9.6 | 2.0% | coding (558/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607824 = | 480 (1.650) | coding (667/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607643 | 239 (0.780) | 7 (0.020) | 7/254 | 10.0 | 1.9% | coding (486/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607824 = | 480 (1.650) | coding (667/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607561 | 275 (0.900) | 7 (0.020) | 7/256 | 10.1 | 1.8% | coding (404/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607823 = | 492 (1.680) | coding (666/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607384 | 320 (1.040) | 7 (0.030) | 6/240 | 10.2 | 2.1% | coding (227/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607853 = | 378 (1.380) | coding (696/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607256 | 432 (1.410) | 8 (0.030) | 7/262 | 10.2 | 2.1% | coding (99/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607482 = | 312 (1.040) | coding (325/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607817 = | 500 (1.630) | 7 (0.020) | 7/266 | 10.3 | 1.4% | coding (660/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607825 | 496 (1.630) | coding (668/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||