mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 52 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,285,580 | 0 | A | G | 44.7% | 160.1 / inf | 314 | I274T (ATA→ACA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,647 | 0 | C | A | 42.0% | 230.9 / inf | 352 | V252L (GTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,575 | 0 | T | G | 41.8% | 231.9 / inf | 316 | N276H (AAT→CAT) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,567 | 0 | C | T | 40.2% | 231.4 / inf | 311 | L278L (CTG→CTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 634,054 | 0 | C | G | 40.0% | 127.8 / 44.1 | 108 | E573Q (GAA→CAA) ‡ | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 1,730,075 | 0 | G | C | 35.1% | 175.3 / 35.5 | 115 | E166Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 634,058 | 0 | C | G | 34.4% | 158.2 / 26.7 | 108 | K571N (AAG→AAC) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 1,366,109 | 0 | G | T | 31.4% | 145.6 / 12.1 | 108 | D203Y (GAT→TAT) | EO946_RS07135 | PepSY domain‑containing protein |
| * | NZ_CP034943 | 3,285,713 | 0 | G | A | 30.7% | 229.4 / 125.7 | 139 | L230L (CTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 2,991,227 | 0 | T | G | 30.1% | 186.6 / 49.9 | 143 | intergenic (+28/‑179) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 2,991,236 | 0 | C | G | 30.0% | 232.9 / 35.3 | 143 | intergenic (+37/‑170) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 1,730,066 | 0 | G | C | 29.5% | 171.1 / 15.8 | 112 | E163Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 1,730,093 | 0 | G | C | 28.4% | 170.5 / 18.6 | 105 | E172Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 1,366,115 | 0 | G | C | 28.0% | 179.5 / 18.9 | 110 | E205Q (GAA→CAA) | EO946_RS07135 | PepSY domain‑containing protein |
| * | NZ_CP034943 | 634,064 | 0 | C | G | 26.6% | 230.8 / 24.8 | 129 | W569C (TGG→TGC) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 1,730,071 | 0 | G | C | 26.1% | 201.6 / 17.3 | 115 | T164T (ACG→ACC) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 634,052 | 0 | T | G | 25.9% | 165.9 / 14.3 | 108 | E573D (GAA→GAC) ‡ | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 2,991,252 | 0 | C | A | 25.9% | 256.8 / 23.7 | 136 | intergenic (+53/‑154) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 1,730,084 | 0 | G | C | 25.4% | 208.7 / 16.4 | 114 | D169H (GAT→CAT) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 1,730,096 | 0 | G | C | 25.2% | 168.3 / 18.4 | 105 | E173Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 607695 = | 146 (0.780) | 29 (0.170) +AGTAGCCCCT |
21/250 | 3.6 | 14.8% | coding (538/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 215 (1.150) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607210 | 261 (1.390) | 16 (0.100) +AGCGACAGGAGCTACC |
7/238 | 7.3 | 8.2% | coding (53/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607587 = | 146 (0.780) | coding (430/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607659 = | 140 (0.750) | 9 (0.050) +AGTAGCCCCT |
6/250 | 8.0 | 5.2% | coding (502/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 216 (1.150) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607566 = | 157 (0.840) | 9 (0.050) +CGCTCCGGT |
4/252 | 9.2 | 6.0% | coding (409/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607637 | 147 (0.780) | coding (480/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607515 = | 179 (0.950) | 10 (0.050) +GGT |
3/264 | 10.1 | 6.0% | coding (358/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607637 | 142 (0.760) | coding (480/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607256 | 245 (1.310) | 4 (0.020) | 3/264 | 10.1 | 1.7% | coding (99/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607428 = | 210 (1.140) | coding (271/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 1773981 | 215 (1.150) | 3 (0.020) | 3/268 | 10.2 | 1.5% | coding (12490/15141 nt) | EO946_RS09125 | non‑ribosomal peptide synthetase |
| ? | NZ_CP034943 | = 3717287 | 175 (0.940) | intergenic (‑189/‑131) | spsA/gerQ | spore coat dTDP‑glycosyltransferase SpsA/spore coat protein GerQ | |||||
| * | ? | NZ_CP034943 | 183537 = | 190 (1.010) | 3 (0.020) | 3/270 | 10.2 | 1.4% | coding (1488/1590 nt) | EO946_RS01055 | AraC family transcriptional regulator |
| ? | NZ_CP034943 | = 530405 | 221 (1.180) | coding (415/981 nt) | EO946_RS02770 | aldo/keto reductase | |||||