mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM406671 | 704944 = | NA (NA) | 1077 (1.010) | 211/296 | 3.9 | NA | coding (127/261 nt) | llmg_0720 | conserved hypothetical protein |
| ? | AM406671 | = 796737 | NA (NA) | intergenic (+88/‑293) | llmg_0823/ps333 | putative transposase helper protein for IS712D/terminase small subunit | |||||
| * | ? | AM406671 | = 1321046 | 739 (0.690) | 60 (0.070) | 48/248 | 26.5 | 8.4% | intergenic (‑192/+485) | xpt/llmg_1347 | xanthine phosphoribosyltransferase/hypothetical protein |
| ? | AM406671 | 1380521 = | 695 (0.780) | intergenic (‑458/+78) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | 1333548 = | NA (NA) | 118 (0.120) | 52/270 | 27.0 | 13.4% | intergenic (‑831/+481) | llmg_1358/llmg_1359 | conserved hypothetical protein/conserved hypothetical protein |
| ? | AM406671 | = 1380520 | 837 (0.780) | intergenic (‑457/+79) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | 1229363 = | NA (NA) | 226 (0.210) | 48/296 | 29.9 | 18.1% | coding (222/261 nt) | llmg_1260 | conserved hypothetical protein |
| ? | AM406671 | = 1823438 | 1024 (0.960) | coding (127/261 nt) | llmg_1841 | conserved hypothetical protein | |||||
| * | ? | AM406671 | 778852 = | 1067 (1.000) | 139 (0.230) +62 bp |
17/172 | 32.2 | 18.1% | intergenic (+11/+180) | rbsB/ps301 | ribose ABC transporter substrate binding protein RbsB/putative integrase |
| ? | AM406671 | 2063454 = | 1109 (1.040) | intergenic (‑244/+964) | sunL/ps461 | Ribosomal RNA small subunit methyltransferase B/bacteriophage lysin | |||||
| * | ? | AM406671 | 1229363 = | NA (NA) | 183 (0.170) | 39/296 | 32.8 | NA | coding (222/261 nt) | llmg_1260 | conserved hypothetical protein |
| ? | AM406671 | 1232380 = | NA (NA) | coding (127/261 nt) | llmg_1264 | putative transposase helper protein for IS981 | |||||
| * | ? | AM406671 | 778852 = | 1067 (1.000) | 33 (0.030) | 30/270 | 34.4 | 3.3% | intergenic (+11/+180) | rbsB/ps301 | ribose ABC transporter substrate binding protein RbsB/putative integrase |
| ? | AM406671 | = 820924 | 952 (0.980) | intergenic (+251/‑254) | ps358/llmg_0854 | conserved hypothetical protein/hypothetical protein predicted by Glimmer/Critica | |||||
| * | ? | AM406671 | = 84512 | NA (NA) | 44 (0.040) +AAAA |
32/288 | 34.8 | NA | pseudogene (177/729 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 84526 = | NA (NA) | pseudogene (191/729 nt) | tnp1077 | pseudogene | |||||
| * | ? | AM406671 | 669736 = | 1133 (1.060) | 94 (0.110) +32 bp |
11/232 | 41.4 | 10.4% | coding (10/498 nt) | llmg_0676 | hypothetical acetyltransferase |
| ? | AM406671 | = 699762 | 945 (0.880) | intergenic (‑51/‑32) | llmg_pseudo_20/llmg_0715 | pseudogene/hypothetical protein predicted by Glimmer/Critica | |||||
| * | ? | AM406671 | = 2410715 | 1107 (1.040) | 15 (0.020) | 14/260 | 41.5 | 1.5% | intergenic (‑313/+165) | llmg_2458/llmg_2459 | putative fibronectin‑binding protein/conserved hypothetical protein |
| ? | AM406671 | 2411162 = | 1063 (1.130) | intergenic (‑34/+39) | llmg_2459/llmg_2460 | conserved hypothetical protein/conserved hypothetical protein | |||||