mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 45.8% | 63.0 / 21.8 | 48 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 4,393,061 | 0 | T | G | 37.5% | 47.8 / 12.6 | 32 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 1,004,106 | 0 | A | C | 36.0% | 97.8 / 12.3 | 50 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 273,581 | 0 | T | G | 35.2% | 99.0 / 10.4 | 54 | G136G (GGT→GGG) | yagU | conserved inner membrane protein |
| * | REL606 | 1,484,105 | 0 | A | G | 30.2% | 65.6 / 22.5 | 43 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 2,296,329 | 0 | A | C | 28.8% | 139.2 / 15.8 | 59 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,416,838 | 0 | T | G | 27.7% | 171.5 / 21.9 | 83 | intergenic (+1/‑4) | ECB_01334/ECB_01335 | putative Lysozyme/conserved hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 72 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3201814 = | 66 (1.120) | 21 (0.380) | 11/142 | 3.9 | 18.6% | coding (366/1104 nt) | yhaC | hypothetical protein |
| ? | REL606 | 3202251 = | 121 (2.180) | coding (803/1104 nt) | yhaC | hypothetical protein | |||||
| * | ? | REL606 | = 2042274 | 84 (1.430) | 15 (0.290) | 8/134 | 4.6 | 21.1% | coding (547/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042743 | 37 (0.710) | coding (78/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2041054 = | 71 (1.210) | 13 (0.240) | 8/136 | 4.7 | 15.9% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 73 (1.370) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2042091 = | 53 (0.900) | 8 (0.150) | 7/140 | 5.2 | 10.7% | coding (730/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2042518 = | 84 (1.530) | coding (303/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2038432 = | 65 (1.110) | 16 (0.310) | 6/134 | 5.4 | 21.6% | coding (517/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2038941 = | 58 (1.110) | coding (8/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 3022392 = | 58 (0.990) | 11 (0.210) | 6/136 | 5.5 | 13.5% | coding (293/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022865 = | 88 (1.660) | intergenic (‑181/+393) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | 2036832 = | 54 (0.920) | 7 (0.130) | 6/136 | 5.5 | 12.4% | coding (127/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | 2037060 = | 50 (0.940) | coding (1071/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | 1219479 = | 65 (1.110) | 13 (0.240) | 6/136 | 5.5 | 15.6% | intergenic (+117/‑283) | ymgF/ycgH | hypothetical protein/predicted protein; b4491 |
| ? | REL606 | 1220055 = | 82 (1.540) | pseudogene (294/2622 nt) | ycgH | predicted protein; b4491 | |||||
| * | ? | REL606 | 3022508 = | 59 (1.010) | 10 (0.200) | 5/126 | 5.6 | 14.0% | coding (177/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3023074 = | 73 (1.480) | intergenic (‑390/+184) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | = 3737261 | 87 (1.480) | 6 (0.110) | 6/142 | 5.7 | 6.7% | coding (566/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737695 | 85 (1.530) | coding (132/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||