mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 350,174 | C→T | A185T (GCT→ACT) | frmB ← | predicted esterase |
| RA | 474,210 | Δ1 bp | coding (1096/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 1,004,196 | T→A | intergenic (‑122/+480) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| JC JC | 1,305,298 | IS150 (–) +3 bp | coding (940‑942/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,332,148 | (T)6→7 | intergenic (+131/‑79) | topA → / → cysB | DNA topoisomerase I/DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,949,211 | G→A | Q182* (CAG→TAG) | tap ← | methyl‑accepting protein IV |
| RA | 2,141,329 | Δ1 bp | intergenic (‑84/+110) | ECB_02035 ← / ← ECB_02036 | hypothetical protein/hypothetical protein |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,268,960 | T→G | L132R (CTG→CGG) | atoC → | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
| RA | 3,145,769 | C→T | intergenic (+100/‑95) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
| RA | 3,613,043 | +TT | intergenic (‑104/+79) | dctA ← / ← yhjK | C4‑dicarboxylate transport protein/predicted diguanylate cyclase |
| RA | 3,633,651 | T→C | E219G (GAA→GGA) | dppD ← | dipeptide transporter |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 4,101,777 | A→C | intergenic (‑7/+86) | hslV ← / ← ftsN | ATP‑dependent protease peptidase subunit/essential cell division protein |
| RA | 4,162,570 | T→A | I572N (ATC→AAC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,202,004 | A→G | Y186H (TAT→CAT) | iclR ← | DNA‑binding transcriptional repressor |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4217526 = | 49 (0.880) | 52 (1.030) | 40/136 | 0.2 | 51.6% | coding (961/2097 nt) | yjbH | predicted porin |
| ? | REL606 | = 4440926 | 53 (1.050) | coding (190/552 nt) | yjgA | hypothetical protein | |||||