breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation freq annotation gene description
RA BX571857 431,505 T→C 9.5% S77P (TCA→CCA)  SAS0387 → exotoxin
RA BX571857 545,010 G→A 5.1% intergenic (+413/+298) unknown → / ← SAS0475 –/GntR family regulatory protein
RA BX571857 605,157 T→C 6.4% D1007D (GAT→GAC SAS0521 → bone sialoprotein‑binding protein
RA BX571857 605,193 T→C 5.0% D1019D (GAT→GAC SAS0521 → bone sialoprotein‑binding protein
RA BX571857 605,238 T→C 6.5% S1034S (AGT→AGC SAS0521 → bone sialoprotein‑binding protein
RA BX571857 1,035,394 A→T 5.1% intergenic (+392/‑249) SAS0963 → / → SAS0964 hypothetical protein/putative exported protein
RA BX571857 1,233,404 T→G 34.7% V109V (GTT→GTG SAS1155 → conserved hypothetical protein
RA BX571857 1,252,438 T→C 100% intergenic (+358/‑77) SAS1171 → / → SAS1172 signal recognition particle protein/30S ribosomal protein S16
JC BX571857 1,332,856 30 bp→30 bp 15.8% coding (185‑214/1239 nt) SAS1239 → conserved hypothetical protein
RA BX571857 1,434,367 T→A 10.3% G144G (GGT→GGA SAS1338 → putative tetrahydrodipicolinate acetyltransferase
RA BX571857 1,472,392 G→T 6.4% pseudogene (3325/5622 nt) ebh ← very large surface anchored protein (pseudogene)
RA BX571857 1,868,342 G→A 100% G129D (GGT→GAT)  SAS1720 → putative membrane protein
RA BX571857 1,937,435 A→G 6.4% noncoding (62/90 nt) tRNA Ser anticodon TGA_ Cove score 61.04 ← tRNA‑Ser
RA BX571857 2,700,167 T→G 5.1% E767D (GAA→GAC SAS2516 ← fibrinogen and keratin‑10 binding surface anchored protein
JC BX571857 2,705,150 30 bp→30 bp 9.3% coding (836‑865/1437 nt) SAS2519 ← arginine/ornithine antiporter
RA BX571858 20,628:1 +G 100% coding (288/306 nt) pSAS24 → putative exported protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571857 = 165482NA (NA)126 (0.570) 7/136 NT 33.8% coding (47/267 nt) SAS0144 hypothetical protein
?BX571857 = 273445 313 (1.120)coding (57/135 nt) SAS0230 hypothetical protein
* ? BX571857 980997 =NA (NA)23 (0.120) 20/118 NT NA noncoding (1/27 nt) Repeat flanking prophage phiSa4(476) Repeat flanking prophage phiSa4(476)
?BX571857 = 1025750 NA (NA)intergenic (+519/‑57) SAS0954/SAS0955 amidase/putative protease
* ? BX571857 = 2116011294 (1.060)28 (0.100)
+CA
13/168 NT 9.7% intergenic (+174/+293) SAS1966/unknown threonine dehydratase biosynthetic/–
?BX571857 2116271 = 239 (0.860)intergenic (+434/+33) SAS1966/unknown threonine dehydratase biosynthetic/–
* ? BX571858 1 =0 (0.000)469 (1.130) 142/170 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–