mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,293 | 0 | T | . | 43.4% | 201.0 / 195.8 | 118 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,297 | 0 | A | G | 41.5% | 145.8 / 178.8 | 153 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,169 | 0 | T | . | 40.0% | 128.6 / 91.2 | 60 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,278 | 1 | . | T | 38.6% | 112.7 / 145.3 | 70 | intergenic (‑12/+22) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 4,122,124 | 0 | C | A | 32.0% | 284.9 / 19.5 | 197 | intergenic (‑15/+22) | ECDH1_RS20430/ECDH1_RS20435 | tRNA‑Gly/tRNA‑Gly |
| * | DH1 | 613,597 | 0 | G | C | 31.0% | 240.4 / 50.9 | 209 | intergenic (+458/+565) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 613,770 | 0 | C | A | 29.8% | 185.6 / 18.4 | 145 | intergenic (+631/+392) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,326,287 | 0 | G | T | 29.2% | 650.3 / 104.0 | 360 | intergenic (+207/+200) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| * | DH1 | 2,169,548 | 0 | G | T | 28.6% | 280.3 / 44.5 | 156 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 1,065,605 | 0 | A | T | 28.5% | 230.0 / 93.7 | 158 | intergenic (+40/‑23) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 3,448,526 | 0 | A | C | 27.9% | 541.6 / 82.8 | 318 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 2,169,577 | 0 | T | G | 27.7% | 167.5 / 35.0 | 147 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 3,447,403 | 0 | A | C | 25.9% | 523.6 / 66.5 | 287 | G346G (GGT→GGG) | malZ | alpha‑glycosidase |
| * | DH1 | 2,591,513 | 0 | T | G | 24.9% | 179.5 / 37.1 | 209 | D86A (GAC→GCC) | ECDH1_RS12815 | hypothetical protein |
| * | DH1 | 613,613 | 0 | T | G | 24.5% | 160.4 / 26.9 | 168 | intergenic (+474/+549) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 613,776 | 0 | T | A | 24.5% | 249.4 / 29.2 | 157 | intergenic (+637/+386) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 1,065,614 | 0 | A | G | 24.3% | 251.1 / 93.7 | 168 | intergenic (+49/‑14) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 1,065,618 | 0 | A | G | 24.2% | 264.2 / 98.4 | 174 | intergenic (+53/‑10) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 2,169,781 | 0 | G | T | 22.8% | 333.5 / 41.3 | 175 | A593A (GCC→GCA) | rsxC | electron transporter RsxC |
| * | DH1 | 1,165,444 | 0 | A | C | 22.7% | 646.0 / 48.2 | 279 | T71P (ACG→CCG) | yfiF | methyltransferase |
| Marginal new junction evidence (lowest skew 10 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2668875 | 241 (0.640) | 97 (0.290) | 79/268 | 10.1 | 31.1% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 215 (0.640) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 215 (0.640) | 83 (0.250) | 66/268 | 13.2 | 28.0% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1519086 | 232 (0.620) | 37 (0.140) | 32/220 | 20.3 | 19.6% | coding (71/186 nt) | ECDH1_RS07485 | hypothetical protein |
| ? | DH1 | 1519282 = | 133 (0.490) | coding (787/900 nt) | yfaD | transposase | |||||
| * | ? | DH1 | = 2590941 | 314 (0.840) | 57 (0.180) | 36/260 | 22.3 | 23.5% | intergenic (+1/‑209) | ECDH1_RS12805/ECDH1_RS12810 | tRNA‑Tyr/tRNA‑Tyr |
| ? | DH1 | 2591414 = | 100 (0.310) | noncoding (199/555 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 1355843 = | 69 (0.180) | 155 (0.420) +C |
44/298 | 22.3 | 50.9% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099750 | 232 (0.620) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 1355505 | 358 (0.960) | 67 (0.210) | 35/260 | 22.7 | 21.9% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 168 (0.520) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 130 (0.350) | 118 (0.320) +CTTC |
41/292 | 23.0 | 40.1% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 232 (0.620) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355843 = | 69 (0.180) | 118 (0.320) +C |
42/298 | 23.1 | 33.0% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3100565 | 414 (1.110) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355843 = | 69 (0.180) | 207 (0.560) +C |
42/298 | 23.1 | 75.1% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099542 | NA (NA) | noncoding (268/268 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 1355966 = | 130 (0.350) | 85 (0.230) +CTTC |
40/292 | 23.4 | 24.3% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3100565 | 414 (1.110) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||