mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 33 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,222,062 | 0 | A | G | 72.3% | 235.9 / 128.1 | 159 | E288E (GAA→GAG) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,222,053 | 0 | T | C | 72.2% | 246.3 / 118.1 | 158 | Y285Y (TAT→TAC) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,124,172 | 0 | C | A | 65.2% | 160.1 / 181.0 | 158 | Q38K (CAA→AAA) | yhbO | predicted intracellular protease |
| * | minE | 2,557,356 | 0 | C | A | 63.9% | 256.3 / inf | 274 | Q4K (CAA→AAA) | secB | protein export chaperone |
| * | minE | 1,763,767 | 0 | T | . | 58.2% | 92.8 / 130.2 | 67 | noncoding (77/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,677,695 | 0 | C | T | 57.9% | 101.8 / 206.6 | 171 | intergenic (‑145/+4) | ndk/pbpC | multifunctional nucleoside diphosphate kinase, apyrimidinic endonuclease, and 3'‑phosphodiesterase/fused transglycosylase and transpeptidase |
| * | minE | 2,222,083 | 0 | A | C | 53.7% | 100.7 / 307.7 | 219 | V295V (GTA→GTC) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,222,098 | 0 | A | C | 53.4% | 82.8 / inf | 219 | T300T (ACA→ACC) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,222,101 | 0 | A | G | 53.4% | 44.7 / 309.0 | 219 | E301E (GAA→GAG) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,222,095 | 0 | T | C | 53.2% | 6.6 / inf | 219 | V299V (GTT→GTC) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,222,074 | 0 | T | C | 44.3% | 163.0 / inf | 262 | R292R (CGT→CGC) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,222,075 | 0 | A | G | 44.3% | 118.8 / inf | 262 | I293V (ATT→GTT) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,222,077 | 0 | T | C | 44.3% | 142.4 / inf | 262 | I293I (ATT→ATC) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| * | minE | 2,148,105 | 0 | T | C | 39.1% | 120.9 / 141.1 | 128 | A353A (GCA→GCG) | glmM | phosphoglucosamine mutase |
| * | minE | 2,148,099 | 0 | G | A | 38.8% | 98.0 / 141.0 | 129 | N355N (AAC→AAT) | glmM | phosphoglucosamine mutase |
| * | minE | 1,893,794 | 0 | T | A | 37.7% | 46.4 / 58.2 | 53 | Y141F (TAC→TTC) | mltA | membrane‑bound lytic murein transglycosylase A |
| * | minE | 2,339,871 | 0 | T | C | 35.3% | 280.7 / 252.6 | 255 | V112V (GTA→GTG) | bipA | GTP‑binding protein |
| * | minE | 2,339,880 | 0 | C | G | 34.8% | 352.7 / 303.1 | 268 | T109T (ACG→ACC) | bipA | GTP‑binding protein |
| * | minE | 2,339,883 | 0 | T | C | 34.6% | 312.4 / 259.1 | 269 | Q108Q (CAA→CAG) | bipA | GTP‑binding protein |
| * | minE | 2,339,898 | 0 | G | T | 33.8% | 429.7 / 277.1 | 275 | D103E (GAC→GAA) | bipA | GTP‑binding protein |