mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 69.6% | 22.7 / 16.5 | 23 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2508448 | 43 (1.450) | 4 (0.150) | 4/276 | 1.2 | 8.7% | intergenic (+680/+71) | sarZ/narK | transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter |
| ? | CP000730 | = 2508474 | 44 (1.610) | intergenic (+706/+45) | sarZ/narK | transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter | |||||
| * | ? | CP000730 | 1473650 = | 45 (1.520) | 4 (0.140) | 4/286 | 1.2 | 9.0% | coding (28374/31266 nt) | ebh | extracellular matrix binding protein |
| ? | CP000730 | 1473682 = | 38 (1.340) | coding (28342/31266 nt) | ebh | extracellular matrix binding protein | |||||
| * | ? | CP000730 | 2748154 = | 15 (0.510) | 3 (0.110) | 3/282 | 1.3 | 17.5% | intergenic (‑119/+75) | acsA2/USA300HOU_2603 | acetate‑‑CoA ligase/hypothetical protein |
| ? | CP000730 | 2748202 = | 14 (0.500) | intergenic (‑167/+27) | acsA2/USA300HOU_2603 | acetate‑‑CoA ligase/hypothetical protein | |||||
| * | ? | CP000730 | = 2738713 | 44 (1.490) | 3 (0.110) | 3/280 | 1.3 | 7.2% | intergenic (+1917/‑797) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | = 2738751 | 36 (1.300) | intergenic (+1955/‑759) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter | |||||
| * | ? | CP000730 | 2529098 = | 16 (0.540) | 3 (0.110) | 3/276 | 1.3 | 18.9% | coding (840/1551 nt) | adcA | ABC superfamily ATP binding cassette transporter, binding protein |
| ? | CP000730 | 2529151 = | 11 (0.400) | coding (787/1551 nt) | adcA | ABC superfamily ATP binding cassette transporter, binding protein | |||||