breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 478,502 | C→A | D342E (GAC→GAA) | ndhF → | NADH dehydrogenase (ubiquinone) |
RA | 584,121 | G→T | intergenic (+205/‑67) | rplA → / → rplJ | ribosomal protein L1/ribosomal protein L10 |
RA | 707,909 | A→T | M1M (TTG→ATG) † | mntB ← | ABC superfamily ATP binding cassette transporter, ABC protein |
RA | 973,213 | C→A | E175* (GAG→TAG) | yitU ← | possible HAD superfamily hydrolase |
RA | 1,002,200 | T→G | M173R (ATG→AGG) | mecA2 → | competence negative regulator MecA |
RA | 1,105,994 | T→C | T12T (ACT→ACC) | pdhD → | dihydrolipoyl dehydrogenase |
RA | 1,196,508 | C→A | intergenic (+2563/‑1229) | ftsQ → / → ylmE | cell division protein FtsQ/hypothetical protein |
RA | 1,232,053 | A→T | D233V (GAT→GTT) | prpC → | possible PP2C protein phosphatase |
RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
RA | 1,744,473 | C→T | A67T (GCT→ACT) | apt ← | adenine phosphoribosyltransferase |
RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
RA | 2,289,257 | A→C | V78G (GTA→GGA) | ybbP ← | hypothetical membrane protein |
RA | 2,455,692 | Δ1 bp | coding (1210/1260 nt) | USA300HOU_2315 → | hypothetical membrane protein |
RA | 2,455,698 | 2 bp→AT | coding (1216‑1217/1260 nt) | USA300HOU_2315 → | hypothetical membrane protein |
RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP000730 | 58235 | 58411 | 177 | 2 [1] | [1] 2 | USA300HOU_0048/USA300HOU_0049 | hypothetical membrane protein/hypothetical protein |
* | * | ÷ | CP000730 | 58679 | 59008 | 330 | 2 [1] | [1] 2 | USA300HOU_0049/USA300HOU_0050 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 60664 | 60899 | 236 | 2 [1] | [1] 2 | [USA300HOU_0052]–[USA300HOU_0053] | [USA300HOU_0052],[USA300HOU_0053] |
* | * | ÷ | CP000730 | 63568 | 63662 | 95 | 2 [1] | [1] 2 | speG/USA300HOU_0058 | diamine N‑acetyltransferase/hypothetical protein |
* | * | ÷ | CP000730 | 70771 | 70869 | 99 | 2 [1] | [1] 2 | [arcB1]–[arcR] | [arcB1],[arcR] |
* | * | ÷ | CP000730 | 85062 | 85096 | 35 | 2 [1] | [1] 2 | USA300HOU_0082/copB | nickel (Ni2+)/peptide ABC superfamily ATP binding cassette transporter, ABC protein/P‑ATPase superfamily P‑type ATPase copper (Cu2+) transporter |
* | * | ÷ | CP000730 | 102210 | 102275 | 66 | 2 [1] | [1] 2 | ywqM/USA300HOU_0103 | possible transcriptional regulator/hypothetical protein |
* | * | ÷ | CP000730 | 130935 | 130985 | 51 | 2 [1] | [0] 2 | sarH1/sirC | staphylococcal accessory regulator H1/iron (Fe3+) ABC superfamily ATP binding cassette transporter, membrane protein |
* | * | ÷ | CP000730 | 169548 | 169661 | 114 | 3 [1] | [1] 2 | USA300HOU_0160 | hypothetical protein |
* | * | ÷ | CP000730 | 170862 | 170990 | 129 | 2 [1] | [1] 2 | USA300HOU_0160/adhE | hypothetical protein/alcohol dehydrogenase |
* | * | ÷ | CP000730 | 174003 | 174107 | 105 | 2 [1] | [1] 3 | [cap5A] | [cap5A] |
* | * | ÷ | CP000730 | 203151 | 203249 | 99 | 2 [1] | [1] 2 | [yweA] | [yweA] |
* | * | ÷ | CP000730 | 330200 | 330284 | 85 | 2 [1] | [1] 3 | USA300HOU_0296/esxA | hypothetical protein/ESAT‑6 family virulence protein |
* | * | ÷ | CP000730 | 345080 | 345089 | 10 | 3 [1] | [0] 2 | USA300HOU_0309 | hypothetical membrane protein |
* | * | ÷ | CP000730 | 346023 | 346141 | 119 | 2 [1] | [1] 2 | [USA300HOU_0310] | [USA300HOU_0310] |
* | * | ÷ | CP000730 | 349527 | 349836 | 310 | 2 [1] | [1] 2 | USA300HOU_0316/USA300HOU_0317 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 372047 | 372110 | 64 | 2 [1] | [1] 2 | USA300HOU_0339/lip1 | hypothetical membrane protein/triacylglycerol lipase |
* | * | ÷ | CP000730 | 430004 | 430070 | 67 | 2 [1] | [1] 2 | ahpC1/nfrA | peroxiredoxin subunit C/possible FMN reductase |
* | * | ÷ | CP000730 | 443287 | 443338 | 52 | 2 [1] | [1] 2 | USA300HOU_0416/USA300HOU_0417 | hypothetical protein/transposase |
* | * | ÷ | CP000730 | 444093 | 444182 | 90 | 2 [1] | [1] 2 | [USA300HOU_0419] | [USA300HOU_0419] |
* | * | ÷ | CP000730 | 459969 | 460046 | 78 | 2 [1] | [0] 2 | hsdS1 | type I site‑specific deoxyribonuclease specificity subunit |
* | * | ÷ | CP000730 | 491369 | 491459 | 91 | 2 [1] | [1] 2 | metQ/sle1 | ABC superfamily ATP binding cassette transporter, binding protein/possible LysM family autolysin |
* | * | ÷ | CP000730 | 530650 | 530726 | 77 | 2 [1] | [1] 2 | veg/rplY | hypothetical protein/ribosomal protein L25 |
* | * | ÷ | CP000730 | 611553 | 611680 | 128 | 2 [1] | [1] 2 | azo1/sdrC | hypothetical protein/Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC |
* | * | ÷ | CP000730 | 646919 | 647102 | 184 | 2 [1] | [1] 2 | lplA2/mvaK1 | lipoate‑‑protein ligase A/mevalonate kinase |
* | * | ÷ | CP000730 | 654664 | 654795 | 132 | 2 [1] | [1] 2 | USA300HOU_0592 | hypothetical protein |
* | * | ÷ | CP000730 | 658676 | 658790 | 115 | 2 [1] | [1] 3 | USA300HOU_0598 | hypothetical protein |
* | * | ÷ | CP000730 | 659339 | 659416 | 78 | 2 [1] | [1] 2 | USA300HOU_0598/USA300HOU_0600 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 661147 | 661190 | 44 | 2 [1] | [1] 2 | USA300HOU_0602 | hypothetical protein |
* | * | ÷ | CP000730 | 661312 | 661475 | 164 | 2 [1] | [1] 2 | USA300HOU_0602 | hypothetical protein |
* | * | ÷ | CP000730 | 672405 | 672466 | 62 | 2 [1] | [1] 3 | USA300HOU_0614/yvrC | deoxyribonuclease (pyrimidine dimer)/iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein |
* | * | ÷ | CP000730 | 677741 | 677870 | 130 | 2 [1] | [1] 2 | [USA300HOU_0620] | [USA300HOU_0620] |
* | * | ÷ | CP000730 | 679437 | 679587 | 151 | 2 [1] | [1] 2 | sarA/USA300HOU_0623 | staphylococcal accessory regulator A/hypothetical protein |
* | * | ÷ | CP000730 | 739958 | 740113 | 156 | 2 [1] | [1] 2 | pitA/sle1 | possible PiT family inorganic phosphate transporter/possible LysM domain protein |
* | * | ÷ | CP000730 | 767395 | 767438 | 44 | 2 [1] | [1] 2 | [USA300HOU_0716] | [USA300HOU_0716] |
* | * | ÷ | CP000730 | 831014 | 831181 | 168 | 2 [1] | [1] 3 | raiA/secA1 | possible ribosome‑associated inhibitor protein Y/Sec family Type I general secretory pathway preprotein translocase subunit SecA |
* | * | ÷ | CP000730 | 871137 | 871322 | 186 | 2 [1] | [1] 2 | USA300HOU_0815/USA300HOU_0816 | hypothetical lipoprotein/hypothetical protein |
* | * | ÷ | CP000730 | 879072 | 879133 | 62 | 2 [1] | [1] 2 | emp/USA300HOU_0822 | extracellular matrix protein‑binding protein/hypothetical protein |
* | * | ÷ | CP000730 | 880029 | 880134 | 106 | 2 [1] | [1] 2 | USA300HOU_0822/nuc | hypothetical protein/micrococcal nuclease |
* | * | ÷ | CP000730 | 886744 | 886858 | 115 | 2 [1] | [1] 2 | USA300HOU_0833/USA300HOU_0834 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 888997 | 889121 | 125 | 2 [1] | [1] 2 | [USA300HOU_0837] | [USA300HOU_0837] |
* | * | ÷ | CP000730 | 907236 | 907626 | 391 | 2 [1] | [1] 2 | [USA300HOU_0866] | [USA300HOU_0866] |
* | * | ÷ | CP000730 | 908358 | 908476 | 119 | 2 [1] | [1] 2 | USA300HOU_0866/ear | hypothetical protein/Ear protein |
* | * | ÷ | CP000730 | 928082 | 928107 | 26 | 2 [1] | [1] 2 | USA300HOU_0891 | hypothetical protein |
* | * | ÷ | CP000730 | 951558 | 951575 | 18 | 2 [1] | [0] 2 | yqiG/rocD | flavin reductase/ornithine‑‑oxo‑acid transaminase |
* | * | ÷ | CP000730 | 982245 | 982261 | 17 | 2 [1] | [1] 2 | USA300HOU_0937 USA300HOU_0938 |
hypothetical protein hypothetical membrane protein |
* | * | ÷ | CP000730 | 982786 | 982992 | 207 | 2 [1] | [1] 2 | USA300HOU_0938 | hypothetical membrane protein |
* | * | ÷ | CP000730 | 983048 | 983224 | 177 | 2 [1] | [1] 2 | USA300HOU_0938 | hypothetical membrane protein |
* | * | ÷ | CP000730 | 987682 | 987803 | 122 | 3 [1] | [0] 2 | USA300HOU_0943 | hypothetical membrane protein |
* | * | ÷ | CP000730 | 987952 | 988180 | 229 | 3 [1] | [1] 2 | [oppB1] | [oppB1] |
* | * | ÷ | CP000730 | 1003391 | 1003504 | 114 | 2 [1] | [1] 2 | mecA2/pepF | competence negative regulator MecA/M03 family oligopeptidase F |
* | * | ÷ | CP000730 | 1033714 | 1033793 | 80 | 2 [1] | [1] 2 | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase |
* | * | ÷ | CP000730 | 1035070 | 1035096 | 27 | 2 [1] | [1] 3 | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase |
* | * | ÷ | CP000730 | 1036091 | 1036245 | 155 | 2 [1] | [1] 2 | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase |
* | * | ÷ | CP000730 | 1037670 | 1037804 | 135 | 2 [1] | [1] 2 | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase |
* | * | ÷ | CP000730 | 1041427 | 1041584 | 158 | 2 [0] | [1] 2 | USA300HOU_0984 | glycosyltransferase |
* | * | ÷ | CP000730 | 1054527 | 1054746 | 220 | 2 [1] | [0] 2 | sspA/atl | S01 family glutamyl endopeptidase/bifunctional N‑acetylmuramoyl‑L‑alanine amidase/mannosyl‑glycoprotein endo‑beta‑N‑acetylglucosaminidase |
* | * | ÷ | CP000730 | 1064469 | 1064890 | 422 | 2 [1] | [1] 2 | [brpA] | [brpA] |
* | * | ÷ | CP000730 | 1102216 | 1102350 | 135 | 2 [1] | [1] 2 | [USA300HOU_1035] | [USA300HOU_1035] |
* | * | ÷ | CP000730 | 1169465 | 1169542 | 78 | 2 [1] | [1] 3 | USA300HOU_1097/USA300HOU_1098 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 1171489 | 1171798 | 310 | 2 [1] | [0] 2 | hly/USA300HOU_1100 | alpha‑hemolysin/hypothetical protein |
* | * | ÷ | CP000730 | 1171898 | 1172018 | 121 | 2 [0] | [1] 2 | [USA300HOU_1100] | [USA300HOU_1100] |
* | * | ÷ | CP000730 | 1175354 | 1175445 | 92 | 2 [1] | [1] 2 | USA300HOU_1105/arcB2 | exotoxin/ornithine carbamoyltransferase |
* | * | ÷ | CP000730 | 1264993 | 1265088 | 96 | 2 [1] | [1] 2 | fmhC | FemAB family peptidoglycan biosynthesis protein |
* | * | ÷ | CP000730 | 1295818 | 1295970 | 153 | 2 [1] | [1] 3 | rpsO/pnp | ribosomal protein S15/polyribonucleotide nucleotidyltransferase |
* | * | ÷ | CP000730 | 1313316 | 1313384 | 69 | 2 [0] | [1] 2 | rny/USA300HOU_1219 | possible hydrolase/hypothetical protein |
* | * | ÷ | CP000730 | 1317808 | 1317867 | 60 | 2 [1] | [1] 2 | [miaB] | [miaB] |
* | * | ÷ | CP000730 | 1338944 | 1339263 | 320 | 2 [1] | [1] 2 | USA300HOU_1241/USA300HOU_1242 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 1339316 | 1339701 | 386 | 2 [1] | [1] 2 | USA300HOU_1242 | USA300HOU_1242 |
* | * | ÷ | CP000730 | 1341230 | 1341475 | 246 | 3 [1] | [1] 2 | [USA300HOU_1245] | [USA300HOU_1245] |
* | * | ÷ | CP000730 | 1354849 | 1354884 | 36 | 2 [0] | [1] 2 | USA300HOU_1269/USA300HOU_1270 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 1357197 | 1357337 | 141 | 2 [1] | [1] 2 | [USA300HOU_1272]–[thrA] | [USA300HOU_1272],[thrA] |
* | * | ÷ | CP000730 | 1456223 | 1456445 | 223 | 2 [1] | [1] 2 | arlR/USA300HOU_1351 | response regulator/hypothetical protein |
* | * | ÷ | CP000730 | 1466487 | 1466596 | 110 | 2 [1] | [1] 2 | thyA/USA300HOU_1365 | thymidylate synthase/hypothetical protein |
* | * | ÷ | CP000730 | 1507753 | 1507920 | 168 | 2 [1] | [1] 2 | ald1/polA | alanine dehydrogenase/5'‑3' exonuclease |
* | * | ÷ | CP000730 | 1539230 | 1539342 | 113 | 2 [1] | [1] 2 | [USA300HOU_1405] | [USA300HOU_1405] |
* | * | ÷ | CP000730 | 1562066 | 1562379 | 314 | 2 [1] | [1] 2 | lukS‑PV/USA300HOU_1432 | Panton‑Valentine leukocidin subunit S/bacteriophage amidase |
* | * | ÷ | CP000730 | 1604582 | 1604654 | 73 | 2 [1] | [1] 2 | USA300HOU_1489/USA300HOU_1490 | hypothetical bacteriophage protein/integrase |
* | * | ÷ | CP000730 | 1608900 | 1608979 | 80 | 2 [1] | [0] 2 | USA300HOU_1492/srrB | possible lipoprotein/sensor histidine kinase SrrB |
* | * | ÷ | CP000730 | 1641817 | 1641913 | 97 | 2 [1] | [1] 2 | [xseA]–[nusB] | [xseA],[nusB] |
* | * | ÷ | CP000730 | 1654327 | 1654411 | 85 | 2 [1] | [0] 3 | USA300HOU_1541 | possible competence protein ComGF |
* | * | ÷ | CP000730 | 1656125 | 1656196 | 72 | 2 [0] | [1] 2 | pulF | competence protein ComGB |
* | * | ÷ | CP000730 | 1665251 | 1665341 | 91 | 2 [1] | [1] 2 | sodA/zurR | superoxide dismutase/Fur family transcriptional regulator |
* | * | ÷ | CP000730 | 1697780 | 1697820 | 41 | 2 [1] | [1] 2 | [holA] | [holA] |
* | * | ÷ | CP000730 | 1708329 | 1708415 | 87 | 2 [1] | [1] 2 | USA300HOU_1602 | hypothetical membrane protein |
* | * | ÷ | CP000730 | 1732833 | 1733158 | 326 | 2 [1] | [1] 2 | [USA300HOU_1624] | [USA300HOU_1624] |
* | * | ÷ | CP000730 | 1774371 | 1774457 | 87 | 2 [1] | [1] 2 | hemA/engB | glutamyl‑tRNA reductase/possible GTP‑binding protein |
* | * | ÷ | CP000730 | 1795927 | 1796008 | 82 | 2 [0] | [1] 3 | USA300HOU_1678/phoR | hypothetical membrane protein/sensor histidine kinase |
* | * | ÷ | CP000730 | 1907772 | 1908008 | 237 | 2 [1] | [1] 2 | [USA300HOU_1769] | [USA300HOU_1769] |
* | * | ÷ | CP000730 | 1923817 | 1923868 | 52 | 2 [1] | [1] 2 | USA300HOU_1786 | hypothetical protein |
* | * | ÷ | CP000730 | 1932704 | 1932723 | 20 | 2 [1] | [1] 2 | USA300HOU_1798 | hypothetical protein |
* | * | ÷ | CP000730 | 1933212 | 1933433 | 222 | 2 [1] | [1] 2 | USA300HOU_1798 | hypothetical protein |
* | * | ÷ | CP000730 | 1934682 | 1935483 | 802 | 2 [1] | [1] 2 | [USA300HOU_1798] | [USA300HOU_1798] |
* | * | ÷ | CP000730 | 1945281 | 1945323 | 43 | 2 [1] | [0] 3 | splA/USA300HOU_1807 | S1B family serine protease SplA/hypothetical protein |
* | * | ÷ | CP000730 | 1955106 | 1955221 | 116 | 2 [1] | [1] 2 | [USA300HOU_1816] | [USA300HOU_1816] |
* | * | ÷ | CP000730 | 1958454 | 1958753 | 300 | 2 [1] | [1] 2 | lukE/USA300HOU_1819 | leukotoxin LukE/hypothetical protein |
* | * | ÷ | CP000730 | 1971985 | 1972112 | 128 | 2 [1] | [1] 2 | [USA300HOU_1832] | [USA300HOU_1832] |
* | * | ÷ | CP000730 | 1994024 | 1994221 | 198 | 2 [1] | [1] 2 | USA300HOU_1854/USA300HOU_1855 | hypothetical protein/IS1181 transposase |
* | * | ÷ | CP000730 | 1995662 | 1995727 | 66 | 3 [1] | [1] 2 | USA300HOU_1855 | IS1181 transposase |
* | * | ÷ | CP000730 | 2003558 | 2003656 | 99 | 2 [1] | [1] 2 | rrs3/perR | 16S ribosomal RNA/Fur family transcriptional regulator |
* | * | ÷ | CP000730 | 2003971 | 2004011 | 41 | 2 [1] | [1] 2 | rrs3/perR | 16S ribosomal RNA/Fur family transcriptional regulator |
* | * | ÷ | CP000730 | 2019104 | 2019140 | 37 | 2 [1] | [1] 2 | mgt/yraA | transglycosylase/C56 family endopeptidase PfpI |
* | * | ÷ | CP000730 | 2024801 | 2024902 | 102 | 2 [1] | [1] 2 | USA300HOU_1878/yihY | hypothetical protein/possible ribonuclease BN |
* | * | ÷ | CP000730 | 2055518 | 2055725 | 208 | 2 [1] | [1] 2 | [sspP] | [sspP] |
* | * | ÷ | CP000730 | 2072586 | 2072629 | 44 | 2 [1] | [1] 2 | USA300HOU_1927/USA300HOU_1928 | hypothetical protein/C45 family peptidase |
* | * | ÷ | CP000730 | 2080502 | 2080555 | 54 | 2 [1] | [1] 2 | [USA300HOU_1938] | [USA300HOU_1938] |
* | * | ÷ | CP000730 | 2085530 | 2085751 | 222 | 2 [1] | [1] 2 | [USA300HOU_1944] | [USA300HOU_1944] |
* | * | ÷ | CP000730 | 2087105 | 2087472 | 368 | 2 [1] | [1] 2 | USA300HOU_1946/chp | hypothetical protein/chemotaxis inhibitory protein CHIPS |
* | * | ÷ | CP000730 | 2135333 | 2135498 | 166 | 2 [1] | [1] 2 | [tcmP] | [tcmP] |
* | * | ÷ | CP000730 | 2181815 | 2182005 | 191 | 2 [1] | [1] 2 | USA300HOU_t0054/sprL | tRNA‑Leu/hypothetical protein |
* | * | ÷ | CP000730 | 2187005 | 2187091 | 87 | 2 [1] | [1] 2 | [rsbU] | [rsbU] |
* | * | ÷ | CP000730 | 2257628 | 2257806 | 179 | 2 [1] | [1] 2 | yuxK/USA300HOU_2130 | hypothetical protein/hypothetical protein |
* | * | ÷ | CP000730 | 2266663 | 2266869 | 207 | 2 [1] | [1] 3 | USA300HOU_2140 | SAP domain protein |
* | * | ÷ | CP000730 | 2335190 | 2335269 | 80 | 2 [1] | [1] 2 | npdA/USA300HOU_2192 | Sir2 family NAD‑dependent deacetylase/hypothetical protein |
* | * | ÷ | CP000730 | 2335458 | 2335542 | 85 | 2 [1] | [1] 2 | npdA/USA300HOU_2192 | Sir2 family NAD‑dependent deacetylase/hypothetical protein |
* | * | ÷ | CP000730 | 2347760 | 2347848 | 89 | 2 [1] | [1] 3 | USA300HOU_2204 | hypothetical protein |
* | * | ÷ | CP000730 | 2348202 | 2348389 | 188 | 2 [1] | [1] 2 | USA300HOU_2204 | hypothetical protein |
* | * | ÷ | CP000730 | 2411329 | 2411560 | 232 | 2 [0] | [1] 2 | sarR/USA300HOU_2277 | staphylococcal accessory regulator A/hypothetical protein |
* | * | ÷ | CP000730 | 2453023 | 2453180 | 158 | 2 [1] | [1] 2 | fosB/hutG | fosfomycin resistance protein/formimidoylglutamase |
* | * | ÷ | CP000730 | 2473374 | 2473438 | 65 | 2 [1] | [1] 2 | [tcaB] | [tcaB] |
* | * | ÷ | CP000730 | 2506985 | 2507091 | 107 | 2 [1] | [1] 2 | USA300HOU_2367/sarZ | hypothetical protein/transcriptional regulator |
* | * | ÷ | CP000730 | 2527580 | 2527676 | 97 | 2 [1] | [1] 2 | USA300HOU_2385/adcA | FNT family formate‑nitrite transporter/ABC superfamily ATP binding cassette transporter, binding protein |
* | * | ÷ | CP000730 | 2543494 | 2543538 | 45 | 2 [0] | [1] 2 | USA300HOU_2403/hlgC | hypothetical protein/gamma hemolysin component C |
* | * | ÷ | CP000730 | 2614662 | 2614882 | 221 | 2 [1] | [1] 2 | [USA300HOU_2478]–USA300HOU_2479 | [USA300HOU_2478],USA300HOU_2479 |
* | * | ÷ | CP000730 | 2626730 | 2626762 | 33 | 2 [1] | [1] 2 | sarT | staphylococcal accessory regulator T |
* | * | ÷ | CP000730 | 2627273 | 2627369 | 97 | 3 [1] | [0] 2 | sarT/sarU | staphylococcal accessory regulator T/staphylococcal accessory regulator U |
* | * | ÷ | CP000730 | 2636047 | 2636218 | 172 | 2 [1] | [1] 2 | fnbA/gntP | fibronectin‑binding protein A/GntP family gluconate:proton (H+) symporter |
* | * | ÷ | CP000730 | 2662561 | 2662641 | 81 | 2 [1] | [1] 2 | [USA300HOU_2515]–[USA300HOU_2516] | [USA300HOU_2515],[USA300HOU_2516] |
* | * | ÷ | CP000730 | 2668456 | 2668510 | 55 | 2 [1] | [1] 2 | USA300HOU_2523/yicL | transcriptional regulator/DMT superfamily drug/metabolite transporter |
* | * | ÷ | CP000730 | 2680849 | 2681125 | 277 | 2 [1] | [1] 2 | [USA300HOU_2538] | [USA300HOU_2538] |
* | * | ÷ | CP000730 | 2764275 | 2764292 | 18 | 2 [1] | [1] 2 | cysJ/gpxA2 | sulfite reductase (NADPH) alpha subunit/glutathione peroxidase |
* | * | ÷ | CP000730 | 2766270 | 2766348 | 79 | 2 [1] | [1] 2 | USA300HOU_2620/USA300HOU_2621 | hypothetical protein/ABC superfamily ATP binding cassette transporter, membrane protein |
* | * | ÷ | CP000730 | 2785958 | 2785970 | 13 | 2 [1] | [0] 2 | aur/isaB | M04 family aureolysin/immunodominant antigen B |
* | * | ÷ | CP000730 | 2818490 | 2818761 | 272 | 2 [1] | [1] 2 | sasA/USA300HOU_2655 | serine‑threonine rich protein/hypothetical protein |
* | * | ÷ | CP000730 | 2825295 | 2825359 | 65 | 2 [1] | [1] 2 | capA/icaR | capsular polysaccharide biosynthesis protein CapA/Ica operon transcriptional regulator R |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 512620 = | 7 (0.240) | 10 (0.460) +40 bp |
9/218 | 0.6 | 66.1% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||
* | ? | CP000730 | = 513613 | NA (NA) | 50 (2.740) +57 bp |
28/184 | 0.1 | NA | noncoding (821/1540 nt) | rrs1 | 16S ribosomal RNA |
? | CP000730 | 513672 = | NA (NA) | noncoding (880/1540 nt) | rrs1 | 16S ribosomal RNA | |||||
* | ? | CP000730 | 514102 = | NA (NA) | 3 (0.110) | 3/284 | 1.3 | NA | noncoding (1310/1540 nt) | rrs1 | 16S ribosomal RNA |
? | CP000730 | 514124 = | NA (NA) | noncoding (1332/1540 nt) | rrs1 | 16S ribosomal RNA | |||||
* | ? | CP000730 | 2537754 = | 10 (0.340) | 3 (0.110) | 3/276 | 1.3 | 20.5% | intergenic (+108/+46) | USA300HOU_2397/gpmA2 | hypothetical protein/phosphoglycerate mutase |
? | CP000730 | 2537797 = | 14 (0.510) | intergenic (+151/+3) | USA300HOU_2397/gpmA2 | hypothetical protein/phosphoglycerate mutase |