mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | = 2937 | 1235 (0.960) | 14 (0.010) | 7/250 | NT | 1.2% | intergenic (‑263/–) | USA300HOU_RS14900/– | hypothetical protein/– |
| ? | NC_012417 | = 2949 | 1025 (0.830) | intergenic (‑275/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
| * | ? | NC_012417 | = 1992 | 1135 (0.890) | 9 (0.010) | 5/248 | NT | 0.85% | intergenic (+225/+101) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2020 | 1027 (0.840) | intergenic (+253/+73) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 1954 | 1074 (0.840) | 11 (0.010) | 10/244 | NT | 1.1% | intergenic (+187/+139) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2064 | 917 (0.760) | intergenic (+297/+29) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 961 = | 1497 (1.170) | 5 (0.000) | 5/250 | NT | 0.36% | pseudogene (682/709 nt) | USA300HOU_RS14890 | replication protein |
| ? | NC_012417 | 980 = | 1340 (1.090) | pseudogene (701/709 nt) | USA300HOU_RS14890 | replication protein | |||||
| * | ? | CP000731 | 20439 = | 450 (1.240) | 7 (0.020) | 7/248 | NT | 1.7% | coding (632/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase |
| ? | CP000731 | 20463 = | 371 (1.070) | coding (608/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase | |||||
| * | ? | CP000731 | = 17001 | NA (NA) | 4 (0.010) | 4/248 | NT | 4.2% | coding (61/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
| ? | CP000731 | = 17016 | 95 (0.260) | coding (46/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
| * | ? | CP000731 | 4412 = | 390 (1.080) | 7 (0.010) | 5/244 | NT | 0.97% | intergenic (+377/‑88) | USA300HOU_pUSA300HOUMR0006/cadR | hypothetical protein/cadmium binding protein |
| ? | NC_012417 | 1955 = | 1067 (0.890) | intergenic (+188/+138) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000731 | 2264 = | 388 (1.070) | 10 (0.010) | 4/238 | NT | 1.5% | intergenic (+44/+124) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2053 = | 958 (0.820) | intergenic (+286/+40) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||