Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F256 I0 R1	328	102.7	5123138	93.4%	4785010	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,712,306:1	(T)_7→8	100%	intergenic (+148/‑463)	nth → / → dtpA	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,712,299	1	.	T	96.9%	209.3 / ‑0.1	64	intergenic (+141/‑470)	nth/dtpA	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (29/33); total (30/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

CCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTT  >  NC_000913/1712204‑1712393

ccTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt                                                                                             >  2:2119518/1‑100 (MQ=255)

 ctctTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGATAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑t                                                                                           >  2:1639371/1‑100 (MQ=255)

  tctTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑tt                                                                                          <  2:2378140/100‑1 (MQ=255)

   ctTTTAAAACATCTTTTTAACGTGAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑ttt                                                                                         >  2:2530563/1‑100 (MQ=255)

   ctTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑ttt                                                                                         >  2:1837081/1‑100 (MQ=255)

    ttttAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑tttt                                                                                        <  1:1090108/100‑2 (MQ=255)

    ttttAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑tttt                                                                                        >  1:338908/1‑99 (MQ=255)

     tttAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑tttta                                                                                       >  1:1896025/1‑98 (MQ=255)

     tttAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑tttta                                                                                       >  1:1721402/1‑98 (MQ=255)

       tAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑ttttaat                                                                                     <  2:826500/100‑5 (MQ=255)

       tAAAACATCTTTTTAACGTCAATGATGCCATTGCTGAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑ttttaat                                                                                     <  2:608239/100‑5 (MQ=255)

        aaaaCATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑ttttaata                                                                                    >  2:1331300/1‑95 (MQ=255)

        aaaaCATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑tttt‑ttttaata                                                                                    >  1:59091/1‑95 (MQ=255)

         aaaCATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAg                                                                                    >  2:1733609/1‑100 (MQ=255)

         aaaCATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAg                                                                                    <  2:842377/100‑1 (MQ=255)

         aaaCATCTTTTTAACGGCAATGATGCCATTACTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAg                                                                                    <  1:1679014/100‑1 (MQ=255)

          aaCATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGc                                                                                   <  2:2045869/100‑1 (MQ=255)

           aCATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCg                                                                                  <  1:2503789/100‑1 (MQ=255)

           aCATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCg                                                                                  <  1:643641/100‑1 (MQ=255)

               ctgtttAACGTCAATGATGCAATTGCATAGAATTATCATCAGGTAATCCGTTTGCGAATAACCAAAAATGCAGGTAAATGAC‑‑TTTT‑TTTAATAACGaca                                                                               >  2:245538/4‑97 (MQ=255)

                   ttAACGTTAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGTGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTc                                                                          <  2:745857/100‑1 (MQ=255)

                   ttAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTc                                                                          <  1:1437104/100‑1 (MQ=255)

                    tAACGTTAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGTTTTTT‑TTTAATAGCGAAATTTTc                                                                          <  1:2070972/100‑1 (MQ=255)

                       cGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTatt                                                                      >  1:1612116/1‑100 (MQ=255)

                        gTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTattc                                                                     >  1:2077321/1‑100 (MQ=255)

                         tCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCTAAATTTTCTattta                                                                    >  2:1183194/1‑98 (MQ=255)

                            atgatgCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTattcattc                                                                 >  1:217492/1‑100 (MQ=255)

                            atgatgCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTattcattc                                                                 <  2:2519314/100‑1 (MQ=255)

                             tgatgCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCg                                                                >  1:802372/1‑100 (MQ=255)

                             tgatgCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCg                                                                <  1:102078/100‑1 (MQ=255)

                             tgatgCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAAGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCg                                                                <  1:1839651/100‑1 (MQ=255)

                              gatgCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCTGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGt                                                               <  2:960003/100‑1 (MQ=255)

                               atgCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTg                                                              <  1:544814/100‑1 (MQ=255)

                                   cATTGCTTAGCGTTATCATGAGTTAATCCGTTTGCTGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGAt                                                            <  2:1791569/98‑1 (MQ=255)

                                    aTTGCTTAGCGTTATCATCAGGTAATCCGTTTGAGAAAAAAAAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATc                                                           <  2:829472/98‑1 (MQ=255)

                                       gCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCaa                                                         >  2:698095/1‑97 (MQ=255)

                                         ttAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCa                                                    <  1:550111/100‑1 (MQ=255)

                                          tAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCAc                                                   >  2:2029204/1‑100 (MQ=255)

                                            gCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGa                                                 >  1:970939/1‑100 (MQ=255)

                                              gTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATg                                               >  1:118754/1‑100 (MQ=255)

                                               ttATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGc                                              <  1:1817269/100‑1 (MQ=255)

                                               ttATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGc                                              <  1:1178432/100‑1 (MQ=255)

                                               ttATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTCTCTATTCAATCGTGATCTTGATCACGaatg                                              <  1:640179/100‑4 (MQ=255)

                                               ttATCATAAGGTAATCCCTTTGCGGATTACCAAAAATGCAGTTTAAT‑TA‑‑TTTTGCTTAATAGCGAAATTTTCTATTCATTCGTGATCTTGATCACGaat                                               <  2:2110655/99‑3 (MQ=255)

                                                 atcatcAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAAATTTATATTCATTCGTGATCAATATCACGATGCt                                             >  2:1861021/1‑99 (MQ=255)

                                                    atcaGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAATATCACGATGCTGt                                           >  2:2043953/1‑98 (MQ=255)

                                                     tcaGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATGACGATGCTGTCGc                                        >  2:755985/1‑100 (MQ=255)

                                                      caGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCa                                       >  1:2211280/1‑100 (MQ=255)

                                                      caGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCa                                       >  1:1720376/1‑100 (MQ=255)

                                                         gTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATg                                    <  1:2081177/100‑1 (MQ=255)

                                                           aaTCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTa                                  >  1:1710744/1‑100 (MQ=255)

                                                            aTCCGTTTGCAGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTaa                                 <  2:1064/100‑1 (MQ=255)

                                                                gcaaacGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAAc                             <  2:236415/95‑1 (MQ=255)

                                                                gTTTGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAAc                             <  2:1877300/100‑1 (MQ=255)

                                                                 tttGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACa                            >  1:150676/1‑100 (MQ=255)

                                                                   tGCGGATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACAtt                          >  1:1622298/1‑100 (MQ=255)

                                                                      ggATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACAATGCTGTCGCAATGTAAAAACATTGc                        <  1:456150/99‑1 (MQ=255)

                                                                       gATAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGc                        >  2:2211145/1‑98 (MQ=255)

                                                                         tAACCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGa                    <  1:1442172/100‑1 (MQ=255)

                                                                          aaCCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTAGTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGaa                   >  2:346039/1‑100 (MQ=255)

                                                                           aCCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGatt                  >  1:1322125/1‑98 (MQ=255)

                                                                           aCCAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAAt                  >  1:1036827/1‑100 (MQ=255)

                                                                             cAAAAATGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCa                >  2:1005472/1‑100 (MQ=255)

                                                                               aaaaTGCAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTAATCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAgg              <  2:2185819/100‑1 (MQ=255)

                                                                                     cAGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTaaaa        <  1:1019918/100‑1 (MQ=255)

                                                                                      aGGTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAAt       <  2:2238798/100‑1 (MQ=255)

                                                                                       ggTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAAt       <  2:827406/99‑1 (MQ=255)

                                                                                       ggTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATc      <  1:274433/100‑1 (MQ=255)

                                                                                       ggTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATc      >  1:2356259/1‑100 (MQ=255)

                                                                                       ggTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATc      >  1:596475/1‑100 (MQ=255)

                                                                                       ggTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATc      <  1:2381797/100‑1 (MQ=255)

                                                                                       ggTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATc      >  1:487282/1‑100 (MQ=255)

                                                                                        gTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCa     >  1:2031688/1‑100 (MQ=255)

                                                                                        gTTAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCa     >  1:632648/1‑100 (MQ=255)

                                                                                         ttAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCAt    <  2:2530552/100‑1 (MQ=255)

                                                                                          tAAT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCAtt   >  1:590294/1‑100 (MQ=255)

                                                                                           aaT‑TGT‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCAttt  <  2:217490/100‑1 (MQ=255)

CCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTTATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT‑TG‑‑TTTT‑TTTAATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTT  >  NC_000913/1712204‑1712393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A