Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F2 I0 R1
|
130 |
5456.6 |
6845820 |
98.4% |
6736286 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,056,962 |
C→A |
19.9% |
F137L (TTC→TTA) |
adk → |
adenylate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,056,962 | 0 | C | A | 19.9%
| 146.7
/ 3.1
| 109 | F137L (TTC→TTA) | adk | adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base C (23/56); new base A (20/7); total (46/63) |
| Fisher's exact test for biased strand distribution p-value = 7.20e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 109 total aligned reads displayed.
CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACTAC > NZ_CP022686/4056825‑4057097
|
caggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCCGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCGGGTCGTGGTTATCACGTTAAATTGaa > 3:646151/1‑140 (MQ=255)
aCGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAAGTTAAATTAAATccgccc > 1:373831/1‑139 (MQ=255)
cgcgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACAGGACTATCTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGa < 2:80643/140‑1 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTTACGTTAAAATCAATCCGCCGCAAGTa > 5:504455/1‑140 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGGGGTTTTAACGTTAAAATGAATCCGCCCaaattt > 7:29224/1‑137 (MQ=255)
gAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAg < 7:399486/140‑1 (MQ=255)
atcGGGCATCAATGTTGTTTACGTTCTTGAATTCGACGTACCGGACTAACTGATTGTTGACCGTATGGTAGGCCGCCGCGTTCACGCGCCGTCGGGGCGTGTTTTTCAGGTTAATTTCAATCCGCCGAAAGTAGAAGTCa < 3:475781/138‑1 (MQ=255)
gCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAACGTTAAATTAAATCCGCCGAAAGTAGAAGGCaa > 1:742114/1‑140 (MQ=255)
gCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTCATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATTACCTTAAAATAAATAAGCCCAAACTAAAAGGCaa > 7:570681/1‑140 (MQ=255)
ggggCATCAATGTTGATTACGTTCTGGAATTCGACTTACCGGACTAACTTATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGaaaa < 4:269626/139‑1 (MQ=255)
ggCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGGGTTTATAAAGTTAAAATAAAAACGGCGCAAATATAAGGaaaaaa > 1:96749/1‑138 (MQ=255)
aaTGTTTATTACGTTCTGTATTTCGACGTACCGGACGAACTTATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGt < 2:879643/140‑1 (MQ=255)
aaTGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATAACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGt > 6:144825/1‑140 (MQ=255)
gTTGATTACGTTCTGGAATTCGACGTACCGGACTAAATTATTGTTGACCGTATCGTCGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTCTCACGTTAAATACAATCCGCCGAAAGTAGACGGCAAAGACGACGTTAc < 8:472333/140‑1 (MQ=255)
gTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAAACCTCCGAAAGTAGAAGTCAAAGACGACGTTAc < 7:54932/140‑1 (MQ=255)
tGATTACGTTGTGTAATTCGACGTACCGGCCTAACTGATTGTTGACCGTATCGTTGGCCGCCGCGTTCACGCGCCGTCTGGTCGTTTTTAACAAGTTAATTTAAATCCGCCGAAAGTAGATGGCAAAGACGACGTTACCg < 7:433567/140‑1 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACCTTAAATTAAATACGCCCAAAGTAGAAGGCAAAGACGACCTTACCGGt > 8:343909/1‑140 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTAAAACGTTAAATTCAATACGCCGAAAGTATAATGCAAAGACGACGTTACAGGt > 5:542442/1‑140 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACGTTAAATTCAATACGCCGAAAGTAGTAGGCCAATCCCACGTTACAGGt > 2:274348/1‑140 (MQ=255)
ttACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTg < 1:174263/140‑1 (MQ=255)
cGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGCCGACGGTACCCGTgaat > 4:534673/1‑139 (MQ=255)
cGTTCTCGATTTCGAGGTACCCGACGAACTGATTTTAGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTgaag < 4:444889/140‑1 (MQ=255)
gTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTgaaga > 3:41904/1‑140 (MQ=255)
gTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAAATAAATACGCCCTAAGTATAAGGCAAAGACGACGTTACCGGGgaagc > 1:757626/1‑139 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGGGTTTATCACTTTAAATTAAATGCCCCGAAACTAGAAGGCAAAGACGAAGTTACCGGTgatacac > 6:78006/1‑135 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTGTGGTCGTGGTTATAACGGTAAATTCAATCAGCCCCAAGTAGTAGGCAAAGTCGCCCTTTCACGTgaagaaa > 6:322717/1‑139 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAAc > 7:320507/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGATAAATTAAATCCGCCCAAAGTAGAAGGCAAATACGCCGTTACCGGTGAAGCAc > 7:320511/1‑140 (MQ=255)
tGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTGATCACGGTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTTCCGGTGAAGAACTg > 7:806973/1‑140 (MQ=255)
tatttCGACTAACCGGACGAACTGATTGTGGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCCCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGAc < 3:781408/137‑1 (MQ=255)
aaTTGGACGTACCGGACGAACTGATTGTTGACCGTATCGTTGGCCGCCGCTTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACt < 2:446446/140‑1 (MQ=255)
ttCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTAc < 4:482951/140‑1 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGGGGTTTTCACGTTAAATTAAAAACGCCGAAAGTAGAATGAAAAGAAGACGTTACCCGTGAAGAACTGCCTAccc > 2:350038/1‑140 (MQ=255)
cGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAg > 4:180484/1‑98 (MQ=255)
cGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAg < 3:180484/98‑1 (MQ=255)
tACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTTTCACGGTTAATTGCATCCGCCGAAAGTAGAAGGCAAAGACGCCGTTTCCGGTGGAGCACGGACTACCCGTaaa > 5:378117/1‑140 (MQ=255)
tACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAACGTTAAATTCAATCCCCCCCAAGTATCAGGCAAAAACGGCGGTTCCGGGGAATAACAGACTACCCGGaaa > 3:689421/1‑140 (MQ=255)
ccGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 6:721954/140‑1 (MQ=255)
cGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCGGGTCGGGTTTATGCCGTTAAATTCAATCCGCCGAAAGTTGAAGGCAAAGACGACGGTACCGGTGAGGAACTTCCTACCCGTAAAGAc > 4:508352/1‑140 (MQ=255)
ccGACCTGATTGTTGACCGTATCGTCGTCCGCCGCGTTCACGCGCCGTCTGGTCGTTTTTATCCCGTAAAATTCAATCCGCCGTAAGTAGATGGCAACGACGCCGTTACCTGTGAAGAACTGACTACCCGTAAAGACGAt < 8:752637/139‑1 (MQ=255)
ccGAACTGATTGTTGACCTTTTCTTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:64955/139‑1 (MQ=255)
agtaaCTGATTGTTGACGGTTTCGTTGGCGGGCGGGTTCTCGCGCGGTTTGGTCGTGTTTATCAGGTTAATTTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:434048/137‑1 (MQ=255)
actaaCTGTTTGTTTACCTTATGGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTATATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:611149/137‑1 (MQ=255)
actaaCTGATTGTTGACCGTATCGAAGGCCGCCGGGTTCACGCGCCGTCTGGTCGGTTTAATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 6:310473/137‑1 (MQ=255)
aagaccTGTTTGTGGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTAAAATTCAATCCGCCGACAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:27450/135‑1 (MQ=255)
aCGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 2:195683/140‑1 (MQ=255)
aCGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGGCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 5:330779/140‑1 (MQ=255)
ctaaCTTATTGTTGACCTTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAGTTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATc < 4:295206/138‑1 (MQ=255)
aCTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTATTAACGTTAAATTAATTACGACGATAGTAGTAGGCAAAGACGCCGGGACCGGTGAAGCCAGGGCTTCCCGTAAAGAAGAACaag > 4:831127/1‑138 (MQ=255)
tGATTGTTGACCTTATCGTAGGCCGCCGCGTTCACGCGCGGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGACGTCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGaa < 1:517091/140‑1 (MQ=255)
ttttgACCGTATCGTCGGCCGCCGCGTTCACTCGCGTTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAgaga < 5:687416/138‑1 (MQ=255)
tgttgACCGTATCGTCGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGTTTAAATTCAATCCGCCGAACGTAGAACGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAgaga < 3:467844/140‑1 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTCAATCCGCCGAAAGTAGAAGGCAAATACGCCGTTACCGGTTCAGAACAGACGACCCGGAAAGACGATCAGGAAgaga > 8:366354/1‑140 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTAAATACGCCGAAAGGAGAAGGCAAAGACGACCTTACCGGTGAAGAAAGGACTACCCGTAAAGACGATCAGGAagagc > 1:651705/1‑139 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATGACGTTTAATTAAATCCGCCGCAAGTAGAAGGCAAAGACGACGGTACCGGGGTAGAACTGACTACCCCTAAAGACGATCAGGAAgaga > 3:803299/1‑140 (MQ=255)
ttgACCGTAGAGTAGGCTCCCCCGTGCACGCGCCGTTTGGTCTTGTTTAACACTTTAAATTCAATAGGCCTAAAGTATTACGATAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 4:590565/140‑1 (MQ=255)
ggACGGTATCGTTGGCCGCCGCGTTCACGCGCGGTCTGGTGTGGTATTTCACGTAAAATTCAATCCGCATAACGTAGAAGGAAAATACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcg < 3:195034/139‑1 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATACGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGGGAAGAACAGACTACCCGTAAAGACGATCAGGAAGAGACcgt > 2:159851/1‑140 (MQ=255)
tttCGTTGGCCGCGGGGTTCAGGTGCGGTCTGGTCGTGTTTATAACGTTAATTTCAATCCGCGGAAATTAGAAGGCATTGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgtacgta < 1:839719/138‑1 (MQ=255)
tAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACGTTAAATTCAATCCGCCGAAAGTAGGAGGCAAAGAAGACGGTACCGGGGAAGCACTGACTACCCGTAAAGACGATCAGGAAGAGGCCGTACGTAAACgg > 6:443911/1‑139 (MQ=255)
tggCCGCCGCGTTCACGCGCCGTCTGGCCGTTTTTATCACTTTAAATTCAATCCGCCGAAAGTAGAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 1:377555/139‑1 (MQ=255)
cggcggcCGCGTTCACGCGCCGTGGGGTCGTTTTTATCACTTTAAATTCAAGCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 3:400880/139‑1 (MQ=255)
aGGCCGCCGCGTTCACGCGCCGTCTGGGCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAACGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 6:408795/140‑1 (MQ=255)
aGGCCGCCGCGTGCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 2:361879/140‑1 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGTTTATCACGTGTAAATAGATACGCCGCATAGAGAATGCAAAGACTCACTGCCCGGTGAAGAACTGGATCCCCGGAAAGACGATCAGGAAGAGACCGTTCGTAAACTGCTGGTTg > 2:861910/1‑140 (MQ=255)
cttccACGCGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 7:298766/136‑1 (MQ=255)
cgTTCACGCGCGTGCTGGTCGTGTTAATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 6:609307/140‑1 (MQ=255)
ttCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 4:803299/140‑1 (MQ=255)
gcgcGGGCTGGTCGTGGTTCTCAGTTTAACATCAATCCGCTCAATGTCGACGGCTACGCCGACGTGACCGGTGAAGATCTGACAACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 2:762613/140‑1 (MQ=255)
gcgcCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 2:373831/140‑1 (MQ=255)
gcgcCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 2:760886/140‑1 (MQ=255)
ccGTCTGGTCGTGTTTTTAACCTTAAAATCAATACCCCGAAATTAGAAGGCAAAAACAACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAATAGCACGTTCGTAAACGTCTGGTTGAATACCATCAGAt > 5:778321/1‑140 (MQ=255)
ccGTCTGGTCGTGTTTATCACGTTAAATTAAATACGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAATAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGTATACCATCAGAt > 4:131740/1‑140 (MQ=255)
ccGTCTGGTCGTGTTTATAACGTTAAATTCAATCCGACGAAAGTATCAGGCAAAGACGACGTTACCGGTGAAGAACTGCATACCCGTAAAGAAGATAAGGAAGAGACCGTACGTTAACGTCTGGTTGAATACCATCAGAt > 4:450215/1‑140 (MQ=255)
ccGTCTGGTCGTGGTTATAACGTTAAATTAAATCCGCCGAAAGTTGAAGGCAAAGACGACCTTACCGGTGAAGAACTGACTAACCGTAAAGACGATCAGGAAGAGACCGTACCTAAAAGTATGGTTGAATAACATCAGaa > 3:174580/1‑139 (MQ=255)
cTGGTCTTGTTTATCACGTTAAATTCAAGCCGCCGAAAGTAGAAGTCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACt < 8:705869/140‑1 (MQ=255)
gtggtgtTTATCACGTTAAATTCAATCCGCCGAAAGTAGATGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCa < 4:814478/137‑1 (MQ=255)
gTCGTTTTTATACAGTTAATTTAATTCCGCCTAAATTAGAAGTAAATTACGACGTTACCGGTGAATCACTGACTACCCTTAAAGACTATCTGGAAGACACCGTACTTAAACGTCTGGTTGAATACAATCTGATGACTGCa < 6:31740/140‑1 (MQ=255)
tttATCACGGTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTAACGGGGAAGAAATGCCTACCCCGAAACACGATCAGGAAGCGAACCTACGTAAACGACTGGTTGAATACCCTCAGATGTCAGCACCGCTg > 6:86396/1‑140 (MQ=255)
ttATCACGTAAAATTCAAGCCGCCCAAAGTCGAAGCCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 3:835394/140‑1 (MQ=255)
tATCACTTAAAATCCAATCCGCCGAAAGTATAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGAt < 5:282242/140‑1 (MQ=255)
aTCACGTAAAATTCAATCCGCCTAACGTAGAAGGAAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATc < 5:28245/140‑1 (MQ=255)
acACGTTAAATTAAATCCGCCTACTTGAGAAGTCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCg < 2:193752/139‑1 (MQ=255)
cGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGct > 6:730294/1‑140 (MQ=255)
tttAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 3:534673/139‑1 (MQ=255)
gTTAAATTCAATCAGCCGAAAGTAGAAGGCTAAGACGACGGTACCGGTGAAGAACTGCCTACCCGAAAAGCCGATCAGGAAGAGACCGTCCGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGAGCGGcta > 6:776880/1‑140 (MQ=255)
gTTAAATACAATCCGCCTAAAGTATAAGTAAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGTTCAGGAAGATACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 7:503482/140‑1 (MQ=255)
ttAATTTCAATCGGCCGAAATTAGAAGTCAAAGACGACGTTAGCGGTGAAGAACTGACAACCCGTAAAGACTATCTGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 6:739272/140‑1 (MQ=255)
ttAATTTCAATCCGCCGACACTAGACTCCAAAGACGACGTTACCGTTGAATAACTGACTACCCTTAAAGACGATCAGGAAGAGACCGGACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 6:143713/140‑1 (MQ=255)
ttAAATTCAATCCGCCTAAAGTATATGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 6:115757/140‑1 (MQ=255)
ttAAATTCAATCCGCCGAACGTAGAAGGCAATGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 5:572854/140‑1 (MQ=255)
ttAAATTCAATCCGCCGAAAGTATAAGCCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGCCGAGCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 1:230230/140‑1 (MQ=255)
ttAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac > 1:847867/1‑140 (MQ=255)
ttAAATTCAATCCGCCGAAAGTACAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 5:374602/140‑1 (MQ=255)
ttAAATGCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 2:96749/140‑1 (MQ=255)
ttAAATCAAAGCCCCCTAAAGACGAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 7:418210/140‑1 (MQ=255)
taaaaTTCACTCCGCCCAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 5:343679/138‑1 (MQ=255)
tAAATTCAATCAGCCGAAAGTAGAAGGCAAAGAAGACGATACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCAGCTCTGctact > 2:612903/1‑140 (MQ=255)
aaTTCAATCCGCCGAAAGTCGACGGCAACTACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCtactac < 6:202587/140‑1 (MQ=255)
aaTTCAAGCCGCCTAAAGTAGAAGCCACAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCtactac < 5:167699/140‑1 (MQ=255)
|
CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACTAC > NZ_CP022686/4056825‑4057097
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
