Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,224 |
T→G |
19.5% |
K188N (AAA→AAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,224 | 0 | T | G | 19.5%
| 229.2
/ 25.1
| 173 | K188N (AAA→AAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (39/97); new base G (35/2); total (74/99) |
| Fisher's exact test for biased strand distribution p-value = 1.06e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 179 total aligned reads displayed.
CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCC > NZ_CP022686/1674087‑1674359
|
cTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTAGCCGGGATATATCACTCAAAACACTCTCCTTACATTATTTGTATTTATTGTAGAGTAGGttt > 6:182764/1‑140 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCAGGGATATATCACTCATAACCCTCTCCTTACATGTTTTGTTTTTAGTGTATAGTCGGtttttt > 6:1057605/1‑139 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTGTTTAGTGTAGAGTCGGgtttt > 4:982131/1‑138 (MQ=255)
gcagcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGtttttt > 2:1098348/1‑137 (MQ=255)
gcagcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTGTTg > 3:426171/1‑138 (MQ=255)
aaaaaTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACtt > 4:474567/1‑138 (MQ=255)
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGcgcg < 3:649430/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 4:674255/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:317863/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 2:388827/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCgg < 8:428496/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACTTCTGGCGCGGTCGGTTGc < 2:1094894/138‑1 (MQ=255)
ggCCGTGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACTCTCTCCTTACATTTTTTGTTTTTCTTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:270439/139‑1 (MQ=255)
gCCGGGGTGCATTGTCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGTCGGTTGCGGa < 8:832865/140‑1 (MQ=255)
ccGTGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 6:543727/140‑1 (MQ=255)
cGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATg < 5:96313/140‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 7:284798/140‑1 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGGAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 1:257203/138‑1 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 4:300393/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 1:67384/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 1:472718/138‑1 (MQ=255)
ctctACCAGGGCCTGACGTCGACGCTGAAACTCTTGCAGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:796965/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATACCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:499453/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACTCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:425778/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:10050/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:558156/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:162411/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:600144/140‑1 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCGTATGGCGCGGGCGGGTGCGGATGAGGTAAGGTGGCGTggg > 6:1023301/1‑139 (MQ=255)
aGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTTGGGGGGTGGGGTGGGGGTGAGTAAAGGTGTCGTgggc > 1:266638/1‑136 (MQ=255)
gggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGGTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATaa < 8:1040991/140‑1 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATTTATCACTCATTACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTTTTCATGGGGCGGGGGCGGGTGGGGGTTTGTAAATGGGTCGTGGGAtgaaa > 5:360605/1‑136 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACATATTGAGGCTTAGGTTTCGGTTGAGTAAAGGGTTCGTGGCAAAAcc > 6:997841/1‑139 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 5:198461/140‑1 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTACTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTAGGGCGCGGTAGGGTGCGGATTTGTTAAGCGTTGGTGGGATAACAgcg > 8:563194/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTTGGGCGGTGGGGTGCGGAGGAGTAAAGGTGTCGTGGCATAACAGcgcg > 8:297968/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTa < 8:601179/116‑1 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATTGCGCGGTCGGTTGCGGATGATTAAAGGTGTCGTGGCATAACAgac > 4:1060183/1‑136 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACGTCTGGCGCGGTCGGTTGCGGATGAGTAAAATTGTGGTGGCaaaaaaacc > 1:13487/1‑133 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGGTTTTTACTTATGGGGCGGTGGGGTGCGGTGGAGTTAAGGTTTAGGGGCGTAAAAGcgcg > 5:851254/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCAGGCGCGGTCGGGTGCGGATGATTAAAGGTGTGCTGGCCAAAAAgcgc > 4:729701/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGcgcg < 2:589639/138‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAAATCAGGCGCGGTCGGTTGCGGATGAGTTAAGGTGTCGTGGCATAACAGcgcg > 4:777836/1‑138 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACGTGGGGCGCGGTCGGTTGGGGATGTGTTAAGGTGTGGTTGGATAACAGCGCGGCaa > 6:640080/1‑140 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAaca < 5:1031641/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 3:613780/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 7:751002/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 6:232403/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACGTCTGGGGCGGTAGGGTGCGGGTGAGTAAAGGTGTAGTGGCATAACAGCGCGGCAaca > 8:735021/1‑140 (MQ=255)
gCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTTTACTTCTGGCGCGGACGGTTGAGGCAGAGTTAAGGTGTGGTGGCGTAACAACTCGGCAacc > 2:306390/1‑137 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTGTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTGGTGGCTTTACAGCGCGGCAaccc > 2:519080/1‑136 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 4:4480/138‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGAc < 3:71490/138‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGAc < 4:355438/138‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCATACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTAGTTGCATAACATCGCGTCAACACggcag > 3:91312/1‑135 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTGGGGGGGGGGGGGGTGGGGGTGGGTTAAGTTGTGGTGGCCTAACAGCGGCGGAACCCGGCCGtgcgcg > 7:998472/1‑135 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTAGAGGCGCGGTCGGGTGCGGCTGAGTAAAGGTGTCGTGGGCAAACAGCCACGCAACCAGGACGTACtag > 2:167166/1‑136 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTATGTTTTTAGTGTAGAGTCGGGTTTTGTACCTATCTCGCGGTGCGGTGCGGATGAGTAAAGGTGTCGGGGCGAAACACCGCGGCCACAACGACGAAcaag > 2:1141247/1‑135 (MQ=255)
ccGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCga < 1:311418/138‑1 (MQ=255)
ccGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 8:44853/140‑1 (MQ=255)
ccGGGATATATCAATCATAACACTCTCCTTAGATTTTTTGTTTTTAGTGTAGAGTCGTTTTTTGTACTTCTGGCGCTGTCGGTTGAGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAACACGGTCGTACTCga < 1:1018803/138‑1 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGGTGGGGATTAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACCCGGACGGACTAgat > 3:1130478/1‑138 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTATTTCGCCGGAGGTTGGGGTTGAGTAAAGGTGGGGTTGCATAAAAGCGCGGCCACACGGTCGTACTCgat > 4:913306/1‑138 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTTGAGTCGGTGTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 1:891186/138‑1 (MQ=255)
ggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACGTATGGCGCGGGCGGGTGCGGATGAGTAAAGGTGTCGGGGCATAACAGCGCGGCAACACGGCCGTACTCgatga > 2:890902/1‑138 (MQ=255)
atatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAAATCGTGCGCCGTCGGTTGCGGATTAGTAAATGTTTAGTGGCATAAAAGCGCGGCCACACCGACGTACTCGAAGAACTCtt > 6:182138/1‑140 (MQ=255)
atatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCGGGCGCGGGCGGGTGGGGTTGAGTTAAGGTGTCGTGGCTTAACCGCGCGGCCACCCGGACGTGCGCGCTGCtctcgt > 8:503224/1‑138 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTCTGGCGCGGTCGGTTGCGGATGAGGAAAGGTGGCGGGGCCTAAAAACGCGGCAAAACGGACGTACACGATGATCTCTTAAAGCg > 6:794104/1‑140 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTATGGCGCGGGCGGTTGCGGATGAGGAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAATCGa > 7:953238/1‑140 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCATAACCGCGCGGCAACCCGGCCGTTCGAGATGATCTCTTCAAGCgc > 6:815426/1‑139 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTATGGGGCGGTGGGGTGCGGATGTGTAAATGTGTCGTGGCATAACAGCGAGGCGACACGGGCGGACTCGATGATGTGTTTAAGCgc > 8:906481/1‑139 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTATGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACCGCCCGGCAACACCGCCGGACTCGCTGCTCTCATCAAGCg > 3:116905/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACa > 2:748119/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTGGGGGGGGGGGGTGGGGATGAGTAAATGTGTCGTGGCATAAAAGCGGGGCAACACGGGCGTTCTAGATTATCTATTCAAGCGACAtt > 5:817101/1‑140 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAAATCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTGGTGGGATAAAAGCGCGGGCACACGGACGGACTAGATTATATATTAAAGCGCCa > 4:958475/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTAGTGGCAAAACACCGCGGCCACACGGCCGGACGAGCTGAAAACTTCAAGCGCCa > 2:280114/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACGTCTGGCGGGGTCGGGTGCGGATGTGTAAAGGTGTGGGGGGAGAAAAGCGCGGCAACACGGACGGACGCGATGGTCTCGTAAAGCGGCa > 4:333599/1‑138 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTATGGCGCGGGCCGTTGGGGATTAGTAAAATTGTAGTTGGATAAAACCGCGGGAACACCGGCGTAATCGATGATCAAGTCCAGCCACAATTCaac > 8:209355/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACATATTGCGCGGTAGGTTTCGGAAGAGTAAATGTGTCGTTGCCTAACAACACGGCAACACCGACGTACGACATGATAAGATCAAACGAAAATTCAAGc > 6:1086752/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:190504/64‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 1:1037541/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 4:184632/138‑1 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTGCTTCTGGGGCGGTCGGTTGCGGATGAGTAAAGGTGTAGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATATCTTCAAGCGACAATTCAAGc > 4:71210/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTATTGCGGGGGCGGTTGCGGCTGAGTTAAGGTGTCGTGGCATAACACCGCGGGAACACGGGCGTAGTCGATGAGATCTTCAACCGGCATTTCaatcaa > 5:988215/1‑136 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGTTGTCGTGGAATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 2:647711/138‑1 (MQ=255)
tACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTc < 6:1008712/140‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTGTGGGGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGGATAACAGCGCGGCAACACGGCCGGTCTAGATGATCTCTTCAAGCGACATTTAAAGCTCttac > 7:1050069/1‑138 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 3:527935/138‑1 (MQ=255)
cATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGGACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCt < 7:620197/140‑1 (MQ=255)
ttGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtctt < 5:728246/140‑1 (MQ=255)
ttttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcg < 1:590724/138‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 3:257831/138‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTAGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtc < 2:838961/138‑1 (MQ=255)
ttAGTGGAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTTGCATAACAGCGAGGCAACACGGACTTACTCGATTATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 8:71986/140‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtcttc < 3:159890/138‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtcttc < 2:314583/138‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcggcttc < 2:1084909/138‑1 (MQ=255)
gtgtAGAGTCGGTGTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 6:681542/140‑1 (MQ=255)
gtAGAGTCGGGTTTTATACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 1:164774/138‑1 (MQ=255)
tCGGTTTTTTTAATTATGGAGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGGATAACAGCGCGGCAAAAAGGTCGTACACGATGTTCTCTTAAAGCGACATTTCAAGCTATTACAGATCTTCGTATTAGTCGTAAccc > 6:718031/1‑140 (MQ=255)
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CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCC > NZ_CP022686/1674087‑1674359
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
