Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,224 |
T→G |
14.4% |
K188N (AAA→AAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,224 | 0 | T | G | 14.4%
| 341.0
/ 16.3
| 203 | K188N (AAA→AAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (45/123); new base G (32/2); total (78/125) |
| Fisher's exact test for biased strand distribution p-value = 8.51e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 223 total aligned reads displayed.
TTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACT > NZ_CP022686/1674085‑1674363
|
ttCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGt < 5:345730/140‑1 (MQ=255)
tGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCATGACGGCGACGCTGCAACGCTTGCCGGGAGATATCACTCTTAACACTCTCCTTACATTTTTTGATTTTAGAGTAGAGTC‑GGtt > 3:85550/1‑138 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttttt > 7:500187/1‑140 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGtttt < 1:327289/138‑1 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTg < 5:1162458/140‑1 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTg < 5:726616/140‑1 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTg < 7:823882/140‑1 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATACCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGgtttt > 2:609154/1‑138 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttttt > 4:965724/1‑138 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttttt > 1:1008587/1‑138 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttttt > 2:591702/1‑138 (MQ=255)
agcaAAAATAAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTA‑GGTTTTTTTaat > 8:890120/1‑138 (MQ=255)
caAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACt > 3:34489/1‑138 (MQ=255)
aaaaaTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACtt > 3:1037417/1‑138 (MQ=255)
aaaaaTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCtt > 2:201392/1‑138 (MQ=255)
cggcgCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTGGGGcggtg > 2:670236/1‑137 (MQ=255)
cTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTGACTTATGGCGCGGGCGGTTGCg > 8:209904/1‑140 (MQ=255)
tggcGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGTGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:1001974/137‑1 (MQ=255)
tGCCGGGTTGCTTTTGCTCTACCATGGCCTGACGGCGAAGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTA‑GTTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:281187/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 4:1271998/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:965724/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:736902/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:579440/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:521041/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:580045/138‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 6:347367/140‑1 (MQ=255)
cGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATg < 7:23050/140‑1 (MQ=255)
gCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTa < 2:1046731/138‑1 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 1:504994/138‑1 (MQ=255)
tGCTCTACCAGTGCCTGACGGCGACGCTGAAACTCTTGCCTGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTGTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:297429/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACTGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCTGATGAGTAAAGgtgt < 8:850088/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCTTGTGGCGCGGTGGGTTGCGGGAGAGTTAATgt > 1:630369/1‑138 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 8:741079/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:214906/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:1276651/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:740487/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 1:575670/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 3:496861/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 4:820371/138‑1 (MQ=255)
tGCTCTACCAGGGACTGACGGCGACGCTGAAACTCTTGACTGGATATATCACTCATAAAACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 8:426893/140‑1 (MQ=255)
gtctctACCCGGGCATGGCGGCGACGCTGAAACGCTTGCCGGGATACATCACTCATAAGACTCTACTTACATTTTTTGTTTTTAGTGGAGAGTC‑GGTTTTTGTACTTCTGGCTCGGTATGTTGCTGATGAGTAAAGgt < 3:778908/136‑1 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTATGGGGCGGGGGGTTGGGGGTTTGTTAAGgtgtg > 5:371967/1‑139 (MQ=255)
gtctACCAGGGCCTGACGGAGACGCTGAAACTCTTTACGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGATTAAAGGTGTCg < 6:1069854/139‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACTCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGTGTAAAGgtgt < 1:19094/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:154024/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:456510/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:25979/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCg < 5:690112/140‑1 (MQ=255)
ctctACCAGGGCCAGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:786006/140‑1 (MQ=255)
tctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCATATGGCGCGGTCGGGTGCGGATGAGTAAAGgggtg > 4:1072238/1‑137 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGtttt > 3:142942/1‑92 (MQ=255)
cTGACGGCGACGCTGAACCTCTTTCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTTTTTTTAGTGTATAGTC‑GGGTTTTTGAATTATGGCGCCTTAGGGTGACGAAGAGTAAATTTGTCTTGGcgaaaaa > 2:322168/1‑132 (MQ=255)
cTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTCTGGCGCGGGCGGTTGGGGATGTGTAAAGGTGTCGTGGGATaaaa > 3:296793/1‑136 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑TGTTTTTTGACTTCTGGCGCGGTGGGTTGGGGATGAGTAAAGGTGTCGGGGCATTACacaggg > 8:307854/1‑135 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTTCTTCGGGCGCGGGCGGTTGCGGATGAGTTAAGGTGGCGTGGCATAACcgcg > 2:931042/1‑138 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 6:1141148/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAgcgc < 1:813491/138‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCTGGATATATCACTCATAACAATCTCCTTACATTTTTTTTTTTTAGTGTAGCGTC‑GGGTTTTTTGCTTGTGGAGCGGTGGGTGGCAGTGGAGTTAATGTGTCGTGGGGAAAGAGcgcg > 4:29953/1‑138 (MQ=255)
cGACGCGGATACTCTTGACGGGATATATCACTCATACCACTCTCCTTACATTTATTGATTGTAGTGTAGATTC‑GGGGTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑aa < 7:771121/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACCGCGCGGC‑aa < 4:866008/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑aa < 1:407873/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑aa < 3:617280/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑Aaca < 8:360370/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTGTTTGTAAGTCTGGCGCCGTCGGTTGGGGATGTGTTAAGGTGTCGGGGCCTAACAGCGCGGC‑Aaca > 8:599983/1‑140 (MQ=255)
gCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCGTACATTTTTTGTGTTTAGTGTAGAGTC‑GGGTTTTTTGCTACGGGCGGGGGCGGGTGGGGCTGATTTGAGGGGGGGTGGAATAACAGGGCGGC‑accg > 1:1356869/1‑135 (MQ=255)
tGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGa < 7:1135860/140‑1 (MQ=255)
tGAAACTCTTGCCGGGATATATCAATCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACg < 2:1270138/138‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTGTTAGTGTAGAGTC‑GGTGTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGa < 4:635849/138‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGAc < 2:1208156/138‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACGTCAGGCGCGGTCGGTTGCGGAGGAGGTAAGGTGTGGTGGAGTAACAGCGCGGG‑CACACGGACg > 4:190259/1‑138 (MQ=255)
ctctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGt < 4:1057049/138‑1 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCTTCTGGGGCGGTGGGTTGCGGATGTGTAAAGGTGTCGTGGCATAAAAGCGCGGC‑AACACGGACGTACTCgat > 1:992544/1‑138 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCgatgat < 8:1026460/140‑1 (MQ=255)
atCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑CACACGGACGTACTCGATGATCTCttaa > 7:86927/1‑138 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGa < 5:467266/140‑1 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTATGGCGCGGTCGGTTGTGGATGAGTATAGGTTTCGGGGCATAACCCCGCGGG‑CAAACGGCCGTAATCGAGTAACTGTTCAAGCGCCa > 4:56296/1‑138 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACAt < 4:660544/138‑1 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGC‑GGTTTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACAt < 3:181081/138‑1 (MQ=255)
acacTCGCCTTACATTTTTTGTTTTTAGGGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 8:1139116/140‑1 (MQ=255)
cacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAATTATGGCGCGGTAGGTTGCGGATGAGTAAAGGTGTAGTGGGATAAAACCGCCGC‑AAAACCGACGTACTCGATGATAAATTGAAGCGACAtt > 2:1301383/1‑138 (MQ=255)
acTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑TGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 6:341333/140‑1 (MQ=255)
acTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 4:144925/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTTATTATGGCGGGGTCGGGTGGGTAAGAGTTAAGGTGTCGTGGGATACCAGCGCGGC‑AACACGGGCGTACTAGATTCTATCTTCAAGCGACATTTCAAGc > 7:180087/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 2:1010785/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:428292/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGAGGGCGTTTGCGTATGAGTAAAGGTGTCGTGTCATAACAGCGAGGC‑AACACGGAAGTACTCGATGATCTCTTCAAGCGACATTTCaa < 3:653874/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCGGGCGCGGTCGGGTGCGGCTGTGGAAAGGTGTCGTTGCATTACAGCCCGGC‑ACCACGGAACTACTCGAAGATCGGGTCAAGCGACAATTAAAGc > 8:506554/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTGGAGCGGTAGGGTGCGGATTAGTTAATTTGTCGGGGCATTAAAGAGCGGCAAACAC‑GACGTCCTAGATGATATCTTAAATCCACATTTaaatc > 6:833358/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTATA‑TAGTGGCGAGGGCGGGTGAGGGAGAGTAAATGTGTCGTGGCTTAACAGCGCAGC‑AACACGGACGTACTCGAAGATATCATAAACCGACAATTaaaag > 4:1160877/1‑136 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCTTCTGGCGCGGTCGGTTGCGGCTGAGTAAAGGAGGCGTGGCCTAACAGCGCGGC‑CACACGGACGGACTCGATGATCTCTTCAAGCGCCAtttaacgc > 2:288656/1‑133 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTATTATGGCGCGGGCGGGTGGGGATGAGTAAAGGTGTATTGGCATAACAGCGCGGC‑ACCACGCCCGGCCTCGATGAACTCTTAAAGCGGCAATTCAAGc > 4:846549/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGATTTTGTACTTATGGCGCGGTCCGGTGCGGATTAGTAAAGGTGTAGTGGGATAACAGCGCGGC‑CACACGGTCGTACAGCATGATCTAATGAAGCGGCATTTAAAGc > 4:395378/1‑138 (MQ=255)
ttttGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTTAAGGTGTCGTGGCATAACAGCGCCGC‑ACCACGGACGTACACGATGATCTCTTCAAGCGACAATTAAAGCTCTTCCTGa > 4:611964/1‑138 (MQ=255)
gTTTTTAGTGTAGAGTC‑GGGTTTTTTTCTTATGGCGCGGGCGGTTGCGGAGGAGTAAAGGTGTCGGGGCATAACAGCGCGGC‑AACACGGACGTAATCGATGATCTCGTAAAGCGACCTTTAAAGCTCTTACGTAtctt > 2:347992/1‑138 (MQ=255)
tttAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 3:1312152/138‑1 (MQ=255)
tttAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 1:115151/138‑1 (MQ=255)
ttAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 8:539130/140‑1 (MQ=255)
aGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 3:1299429/138‑1 (MQ=255)
gagTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTaa < 7:567250/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 6:371967/140‑1 (MQ=255)
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TTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGC‑AACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACT > NZ_CP022686/1674085‑1674363
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
