Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F36 I0 R1
|
149 |
10545.8 |
7272710 |
98.3% |
7149073 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,224 |
T→G |
18.2% |
K188N (AAA→AAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,224 | 0 | T | G | 18.2%
| 239.0
/ 14.8
| 156 | K188N (AAA→AAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (31/92); new base G (28/4); total (59/97) |
| Fisher's exact test for biased strand distribution p-value = 1.28e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 174 total aligned reads displayed.
CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAA > NZ_CP022686/1674087‑1674361
|
cTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttt > 5:130224/1‑140 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCATGGCCTGACGGCGCCGCTGAAACTCTAGCCGGGATATATCACTCATAACACTCTCCTAACATTTTTTGTATTTAGTGTAGAGTC‑GGgtt > 2:739699/1‑138 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCGTACATTTTTTGTTTTTAGTGTAGAGTC‑GGtgt > 7:672685/1‑136 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGAGATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttttt > 6:440326/1‑140 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACACTTGCCGGGATATATAACTCAAAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttt > 1:301932/1‑138 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTATACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTAACAATTTTTGTTTTTAGTGTAGAGTC‑GGttt > 2:739695/1‑138 (MQ=255)
gTGCTGCAAAAATCAGCGCGGAGCTGCCGTGTTGGATTTGCTCTACGAGGGCCTGACGGCGACGCTGAAACTCTAGCCTTGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGtttt < 1:739699/138‑1 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGgtttt > 3:64985/1‑138 (MQ=255)
cagcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGTTCTACCAGGGCCTGACGGCGACACTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGttttttt > 1:637809/1‑136 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAc < 1:57045/138‑1 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACtt > 6:875994/1‑140 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTag > 8:857044/1‑137 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCAGTGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAc > 8:217796/1‑138 (MQ=255)
aaaaaTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCtt > 4:119749/1‑138 (MQ=255)
aaaaaTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGCGCCTGACGGCGACGCTGAAACTCTTGCCGGGATAGATCACTCATAACACTCTCCTTACAGTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACtg > 2:598465/1‑137 (MQ=255)
gcgcGTCGCTGCCGGGTTGCATTTGCTCTACCATGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGcgcg < 2:227703/138‑1 (MQ=255)
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTTAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACATCTGGcgcg < 8:207364/138‑1 (MQ=255)
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGcgcg < 2:168863/138‑1 (MQ=255)
cggcgCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGcggtc < 3:59842/138‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGcggtcggt < 3:35460/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:22051/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:811085/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 7:459614/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:507862/138‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:409069/137‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 2:610021/137‑1 (MQ=255)
cgCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:861204/137‑1 (MQ=255)
gCCGGGTTTCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTATCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGa < 6:162949/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTCTGGGGCCGGAGGTTGCGGAt > 6:238850/1‑140 (MQ=255)
tttGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGGCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTTATTCTTGCGCGGGGGGTTGCGGATGAGTAAATgt > 5:364091/1‑140 (MQ=255)
ttctctACCAGGGCCGGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:496558/136‑1 (MQ=255)
tgagctACCAGGGCATGACGGCGACGATGAAACTCTTGCCGGGATAAATCACTCATAACACTCTCCTTACAATTTTTGTTTTTAGTGTAGAGAC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 3:269951/134‑1 (MQ=255)
tGCTCTACCAGGGCCTGTCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTTGCGCTGTCGGTTGCGGATGAGTAAAGgtgt < 6:856970/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCTACTCTGAAACTCTTGCCTGGATATATCACTCATTACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGC‑GGTTTTTGTACTTCTGGCGCGGTCTGTTGCGGATGAGTTAAGgt < 4:419965/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGATACTCTTTCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:633052/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:636968/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:561681/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 7:217796/138‑1 (MQ=255)
ctctACCCGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACCTTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 3:24887/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGTCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:363064/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGTATATATCACTCATAACAATCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGTTCGGTGGCGGATGAGTAAAGgtgt < 3:14939/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:15264/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:480182/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 3:126090/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTAGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:147254/138‑1 (MQ=255)
tctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAGGTATGGGGGGGGCGGTTGGGGATGAGGAAAGgtgtggg > 6:560904/1‑137 (MQ=255)
tACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTgg < 5:570256/140‑1 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGc < 8:174277/138‑1 (MQ=255)
gggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCCCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATaa < 6:755360/140‑1 (MQ=255)
gggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATaa < 5:680817/140‑1 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAc < 7:603564/138‑1 (MQ=255)
cTGACGGCGACGCTGCAACTCTAGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTGATTGTGGTT‑TGGCGGGGGGGGGTGGCGCTGTGTAAAGTTGTCGTGGCCTAAcc > 2:249394/1‑137 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTACTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGGTGGGGATTATTTAATGTGTCGTGGCATAAAAgcg > 5:74902/1‑140 (MQ=255)
ggACGGCGACGCTGAAACTCATGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 4:451607/137‑1 (MQ=255)
gACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGC‑GGGTATTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAgc < 2:120303/138‑1 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTAAAGTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAAGTATGGGGCGGTCGGAGTGGGATGAGGTAAGGTGGGGTGGGATAAccggg > 3:189562/1‑134 (MQ=255)
aCGGCGACGCTGAAACTCTTGCAGGGATATATCACTAATAACACTCTCCTTACAGTTTTTGATTTTAGTTTAGAGTC‑GGTTTTTGTACGTAGTGCGGGGTAGTTTGCGGATGACTTAAGGTGTCGTGGCATaaacgccag > 6:366140/1‑133 (MQ=255)
gggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGAGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 5:238850/139‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTCTGGCGCGGGCGGTTGCGGATGTCTAAAGGGGGGGGGGCATAACAGcgcg > 4:18412/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTATGGCGCGGTCGGTTGCGGTTGAGTAAACGTGTCGTGGGATAACAGcgcg > 7:777213/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTAGGGGGGGGGCGGTTGCGGGTGAGTTAAGGTGTCGGGGGCTAACAgcgcc > 3:460963/1‑137 (MQ=255)
gACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTTGCGATGAGTAAAGTGGTCTTGGCATAACAACGCGGCAac > 5:224554/1‑140 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:657298/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTATGGGGCGGTCGGTTGGGGGTGAGTTAAGGTGTGGTGGCATAACAGCGCGGcca > 4:476357/1‑136 (MQ=255)
aCGCTGAAACTCCTGCCGGGATAAATCACTCATAACCATCTCCTTCAATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGTGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 4:212435/138‑1 (MQ=255)
cGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCTTCTGGCGCGGTCGGTGGGGGGTGTGTAAAGGTGTCGTGGGCTAACAGCGCGGCGac > 8:352599/1‑138 (MQ=255)
cGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAATTGTGGCGCGGTGGGTTGGGGATGAGTAAAGGTGTGGGGGCATAACAGCGCgggcac > 1:712680/1‑134 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 4:90078/138‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAAAACTCTACTTACATTTTGTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTAGCGGATTAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 4:681145/138‑1 (MQ=255)
ttGCCTGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTTGAGTC‑GGGTGTTGTACTTGTGGCGCGGACGGTTGCGGATGAGTAATGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACt < 4:466391/138‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTATGGCGCGGGGGGGTGCGGGTGAGTAAAGGTGTCGTGGCATAACCGCGCGGCCACACGGACGTTCtag > 5:561640/1‑138 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAATTATTGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGGGGCAACACGGACGTACTCg > 6:46055/1‑140 (MQ=255)
tGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTAATTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACACCGCGGCAACACGGACGTACta > 4:26803/1‑137 (MQ=255)
cagggATATATAACTACTAACACTATCATTACATTTTTTGTTTTTAGTGTAGAGTC‑TGGGGTTGTACTTCTGGAGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGAGCGGCAACACGGACGTACTCga < 3:858620/136‑1 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTATTGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCATAACATCGCGGCAACACGGACGTACTAgat > 7:376422/1‑138 (MQ=255)
gggATATTTCACTCATAACACTCTCCTTACATTTTTTGTGTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 4:407375/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 7:805688/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 8:54129/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 3:702686/138‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAg < 3:18412/138‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGGAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAg < 3:795978/138‑1 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 2:277697/138‑1 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTCTGGCGCGGGCGGTTGCGGCTGAGTAAAGGTGTGGTGGCATAACAGCGCGGCCACAACGCCGGACTCGATGATCTCTTCAAGCg > 3:720575/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt > 4:50392/1‑84 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACGTATGGCGCGGTAGGTAGCGGATGAATAAAAGGGACGTGGCATAACAGCCCGGCAACAAGGACGTACTAGATGATCTCTTCAAGCcaca > 4:738518/1‑138 (MQ=255)
cacTCTCCTTACATTTTTTGATTTTAGTGTAGAGTC‑GGTTTTTTTACATAAGGAGACGGAGGTTGCGGATGATTATAGGTGTCGTGGCATAACAGCGCGGCACCCACGACGGACTCGATGATCTCTTGAAGCGGCAtt > 8:716615/1‑138 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGACTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCATAACAGCGAGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 6:704598/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCTTAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:283171/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGATTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 8:65213/138‑1 (MQ=255)
ctcCATACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 5:625323/140‑1 (MQ=255)
atcCTTACATTTTTTTGTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGCTGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:523888/137‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 3:518745/138‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTATGGCGGGGGAGGTTGCGGATGAGTAAAGGTTGCGTGGCATAACACCGCGGCAACACGGACCTTCTCGATGATATCGTCAAGCGACATTTAAAg > 7:289199/1‑138 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAATTAAGGCGCGGTGGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCCCGGGCACACGGACGTACTCGAATATCTCTTCAAGCGACATTTAAAg > 4:780112/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGGGGATGGGTAAAGGTGTCGTGGCATAACCGCGCGGCAACACCGACGGACTCGATGATCTCTTCAATCCACATTTCAAGc > 3:537670/1‑138 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAATTCTGGCTCGGTCGGTTTGGGATGTGTAAAGGGGTCGTGGCATAACAGCGCGGCAAAACCGAAGTAATCGCTTATAGATTCAAGCGACATTTAAATCTCttac > 8:653424/1‑136 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAATTCTGGCGCGGGCGGGTGCGGATTAGTAAAGGTGGCGTGGCATAACAGCGCGGCAAAACGGACGTACTCGATGATCTCTTCAAGCGACATTTGAAGCTCTTcc > 8:127176/1‑138 (MQ=255)
gtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 6:602985/140‑1 (MQ=255)
gtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 6:462355/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGTTCGTTTGCTGATGAGTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGAGACATTTTAAGCTCTTCCTTATCTTCGTCTTCGTCGTAAACCaa < 6:701049/140‑1 (MQ=255)
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CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAA > NZ_CP022686/1674087‑1674361
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
