mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 42 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 64.7% | ‑6.1 / 14.8 | 17 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 4,086,494 | 0 | T | G | 64.7% | 0.9 / 12.5 | 17 | Y102S (TAC→TCC) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 64.3% | 3.2 / 10.5 | 14 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 61.9% | 16.0 / 20.0 | 21 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 60.0% | ‑4.0 / 12.9 | 15 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,125,830 | 0 | C | T | 58.8% | ‑1.5 / 15.0 | 17 | A164T (GCG→ACG) | flgA | flagellar basal body P‑ring formation chaperone FlgA |
| * | NZ_CP009273 | 4,086,507 | 0 | G | T | 57.1% | 17.2 / 31.3 | 21 | Q98K (CAA→AAA) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 56.2% | 6.8 / 27.2 | 16 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 3,964,452 | 0 | T | G | 56.0% | 24.5 / 32.4 | 25 | G320G (GGT→GGG) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 56.0% | 6.2 / 30.7 | 25 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,872,306 | 0 | T | G | 54.5% | 8.9 / 13.0 | 11 | T392P (ACC→CCC) | gyrB | DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 53.8% | 1.4 / 15.4 | 13 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 53.8% | 9.3 / 16.6 | 13 | E391D (GAA→GAC) | guaD | guanine deaminase |
| * | NZ_CP009273 | 711,081 | 0 | A | C | 52.9% | 18.4 / 23.0 | 17 | T72P (ACC→CCC) | BW25113_RS03560 | lipoprotein |
| * | NZ_CP009273 | 797,574 | 0 | A | C | 52.9% | 16.6 / 18.4 | 17 | T78P (ACC→CCC) | ybhI | anion permease |
| * | NZ_CP009273 | 3,126,669 | 0 | A | C | 52.9% | 6.5 / 19.1 | 17 | D216E (GAT→GAG) | yghS | dTMP kinase |
| * | NZ_CP009273 | 3,738,402 | 0 | A | C | 52.9% | 4.3 / 13.6 | 18 | D80A (GAC→GCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 52.6% | 8.4 / 25.7 | 19 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 52.4% | 34.1 / 62.1 | 42 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 4,245,973 | 0 | T | G | 52.4% | 16.1 / 25.0 | 21 | N141T (AAC→ACC) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase PlsB |