mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 63 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 66.7% | ‑2.3 / 17.9 | 21 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 62.5% | ‑5.1 / 38.2 | 40 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 797,574 | 0 | A | C | 60.0% | 9.0 / 12.3 | 15 | T78P (ACC→CCC) | ybhI | anion permease |
| * | NZ_CP009273 | 1,975,994 | 0 | C | G | 60.0% | 3.4 / 10.1 | 10 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 2,436,061 | 0 | T | G | 60.0% | 7.2 / 14.2 | 15 | G273G (GGT→GGG) | mnmC | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 60.0% | 2.4 / 40.9 | 40 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 172,772 | 0 | A | G | 59.0% | 29.3 / 41.3 | 40 | G393G (GGA→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 1,430,446 | 0 | A | C | 58.3% | 8.9 / 10.6 | 12 | G235G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 57.1% | 8.2 / 14.9 | 14 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,429,984 | 0 | G | A | 57.1% | ‑3.4 / 14.6 | 14 | intergenic (‑108/+33) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 1,558,373 | 0 | C | T | 56.2% | 4.1 / 15.8 | 16 | E540K (GAG→AAG) | dosP | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 55.6% | 4.0 / 15.2 | 18 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 970,180 | 0 | C | G | 55.6% | 4.4 / 10.7 | 9 | L136V (CTC→GTC) | mukF | chromosome partition protein MukF |
| * | NZ_CP009273 | 1,379,045 | 0 | T | G | 55.6% | 5.4 / 14.5 | 18 | G224G (GGT→GGG) | ycjX | YcjX family protein |
| * | NZ_CP009273 | 700,996 | 0 | C | A | 54.5% | 4.9 / 13.4 | 11 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 2,636,048 | 0 | T | G | 54.5% | 3.9 / 10.2 | 11 | A52A (GCA→GCC) ‡ | rodZ | cytoskeleton protein RodZ |
| * | NZ_CP009273 | 2,636,050 | 0 | C | G | 54.5% | 5.3 / 11.3 | 11 | A52P (GCA→CCA) ‡ | rodZ | cytoskeleton protein RodZ |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 54.5% | 7.5 / 10.7 | 11 | E391D (GAA→GAC) | guaD | guanine deaminase |
| * | NZ_CP009273 | 3,872,306 | 0 | T | G | 54.5% | 6.6 / 12.6 | 11 | T392P (ACC→CCC) | gyrB | DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| * | NZ_CP009273 | 1,634,789 | 0 | A | C | 53.8% | 10.4 / 14.3 | 13 | G18G (GGT→GGG) | essD | phage lysis protein EssD |