mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 375,729 | 0 | T | C | 50.0% | 40.8 / 53.7 | 81 | L219P (CTG→CCG) | aroM | AroM family protein |
| * | NC_012967 | 3,174,256 | 0 | T | G | 26.9% | 173.8 / 14.0 | 94 | T175P (ACC→CCC) | ygjV | YgjV family protein |
| * | NC_012967 | 4,402,594 | 0 | A | G | 22.3% | 249.6 / 25.1 | 104 | intergenic (+53/+76) | ulaF/yjfY | L‑ribulose‑5‑phosphate 4‑epimerase UlaF/DUF1471 family protein YjfY |
| * | NC_012967 | 2,105,079 | 1 | . | C | 21.7% | 59.5 / 18.1 | 23 | intergenic (+40/+172) | ECB_RS10540/ECB_RS10545 | glycosyltransferase family 2 protein/phage tail protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 147 (0.780) | 24 (0.160) | 22/114 | 6.1 | 20.4% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 70 (0.460) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| * | ? | NC_012967 | 2683104 = | NA (NA) | 5 (0.030) | 4/124 | 13.0 | 3.1% | coding (193/449 nt) | ECB_RS13270 | IS1‑like element IS1A family transposase |
| ? | NC_012967 | 2688063 = | 181 (0.960) | coding (649/1281 nt) | gabT | 4‑aminobutyrate‑‑2‑oxoglutarate transaminase | |||||
| * | ? | NC_012967 | = 227011 | NA (NA) | 5 (0.030) | 4/132 | 13.4 | NA | noncoding (403/1542 nt) | ECB_RS01035 | 16S ribosomal RNA |
| ? | NC_012967 | 241819 = | NA (NA) | coding (259/449 nt) | ECB_RS01120 | IS1‑like element IS1A family transposase | |||||
| * | ? | NC_012967 | 1508931 = | 181 (0.960) | 3 (0.020) | 3/122 | 13.5 | 2.2% | coding (757/846 nt) | nhoA | N‑hydroxyarylamine O‑acetyltransferase |
| ? | NC_012967 | = 4092038 | 116 (0.720) | coding (242/441 nt) | yiiR | DUF805 domain‑containing protein | |||||
| * | ? | NC_012967 | 1460711 = | NA (NA) | 4 (0.020) | 3/130 | 13.9 | 3.5% | coding (248/449 nt) | ECB_RS07290 | IS1‑like element IS1A family transposase |
| ? | NC_012967 | 1682335 = | 121 (0.640) | coding (193/216 nt) | ydgT | transcription modulator YdgT | |||||
| * | ? | NC_012967 | = 379303 | 199 (1.060) | 3 (0.020) | 3/132 | 14.0 | 1.5% | coding (737/909 nt) | mak | fructokinase |
| ? | NC_012967 | 4086375 = | 199 (1.140) | coding (425/903 nt) | fieF | CDF family cation‑efflux transporter FieF | |||||
| * | ? | NC_012967 | 1142669 = | 111 (0.590) | 3 (0.020) | 3/134 | 14.1 | 1.8% | coding (259/1536 nt) | murJ | murein biosynthesis integral membrane protein MurJ |
| ? | NC_012967 | = 4310192 | 222 (1.250) | coding (977/1503 nt) | proP | glycine betaine/L‑proline transporter ProP | |||||
| * | ? | NC_012967 | 3462691 = | 127 (0.670) | 3 (0.020) | 3/136 | 14.2 | 1.9% | coding (1190/1623 nt) | pckA | phosphoenolpyruvate carboxykinase (ATP) |
| ? | NC_012967 | 3462751 = | 189 (1.050) | coding (1250/1623 nt) | pckA | phosphoenolpyruvate carboxykinase (ATP) | |||||